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PLM1_100_b1_sep16_scaffold_5020

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_5020_1
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

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comp(3..356)
-----------------
DNA (354bp)
protein (118aa)
plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC:2.3.1.51)
1-acyl-sn-glycerol-3-phosphate acyltransferase Tax=Synechococcus sp. (strain WH7803) RepID=A5GP13_SYNPW
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_5020_2
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(353..1015)
-----------------
DNA (663bp)
protein (221aa)
cytidylate kinase; K00945 cytidylate kinase [EC:2.7.4.14] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cytidylate kinase (EC:2.7.4.14)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM1_100_b1_sep16_scaffold_5020_3
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1038..2315)
-----------------
DNA (1278bp)
protein (426aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus ATCC 51756.;"
3-phosphoshikimate 1-carboxyvinyltransferase Tax=Acidithiobacillus caldus RepID=F9ZNP0_ACICS
5-Enolpyruvylshikimate-3-phosphate synthase
PLM1_100_b1_sep16_scaffold_5020_4
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(2327..3418)
-----------------
DNA (1092bp)
protein (364aa)
Prephenate dehydrogenase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F1J1_CONWI
prephenate dehydrogenase
Prephenate dehydrogenase {ECO:0000313|EMBL:ADB52154.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM1_100_b1_sep16_scaffold_5020_5
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(3420..4193)
-----------------
DNA (774bp)
protein (258aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:ADB52155.1}; EC=2.5.1.54 {ECO:0000313|EMBL:ADB52155.1};; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Phospho-2-dehydro-3-deoxyheptonate aldolase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F1J2_CONWI
PLM1_100_b1_sep16_scaffold_5020_6
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

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comp(4190..4471)
-----------------
DNA (282bp)
protein (94aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54)
3-deoxy-7-phosphoheptulonate synthase bin=GWD2_Nitrospirae-related_57_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
Tax=GWC2_Nitrospirae_57_13_curated
PLM1_100_b1_sep16_scaffold_5020_7
marine actinobacterium MedAcidi-G1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4507..5487
-----------------
DNA (981bp)
protein (327aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G1.;"
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F1K3_CONWI
PLM1_100_b1_sep16_scaffold_5020_8
unknown

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5447..6082
-----------------
DNA (636bp)
protein (212aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_5020_9
Caldalkalibacillus thermarum, Caldalkalibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6229..6843)
-----------------
DNA (615bp)
protein (205aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Caldalkalibacillus.;" source="Caldalkalibacillus thermarum TA2.A1.;"
Pseudouridine synthase Tax=Caldalkalibacillus thermarum TA2.A1 RepID=F5L638_9BACI
pseudouridine synthase
PLM1_100_b1_sep16_scaffold_5020_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

6856..7146
-----------------
DNA (291bp)
protein (97aa)
hypothetical protein bin=bin7_NC10_sister species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
GYD family protein
Tax=CSP1_6_Rokubacteria
PLM1_100_b1_sep16_scaffold_5020_11
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(7161..7748)
-----------------
DNA (588bp)
protein (196aa)
Chromosome segregation and condensation protein, ScpB Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F1K0_CONWI
chromosome segregation and condensation protein ScpB
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM1_100_b1_sep16_scaffold_5020_12
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(7727..8455)
-----------------
DNA (729bp)
protein (243aa)
Segregation and condensation protein A Tax=Patulibacter medicamentivorans RepID=H0E924_9ACTN
Segregation and condensation protein A {ECO:0000313|EMBL:EHN09837.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
chromosome segregation and condensation protein ScpA
PLM1_100_b1_sep16_scaffold_5020_13
Aeromicrobium marinum, Aeromicrobium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8476..9342)
-----------------
DNA (867bp)
protein (289aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Aeromicrobium.;" source="Aeromicrobium marinum DSM 15272.;"
hypothetical protein Tax=Sciscionella marina RepID=UPI00035D2918
prolipoprotein diacylglyceryl transferase
PLM1_100_b1_sep16_scaffold_5020_14
unknown

Not on your lists

9468..10007
-----------------
DNA (540bp)
protein (180aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_5020_15
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10018..10374
-----------------
DNA (357bp)
protein (119aa)
Uncharacterized protein Tax=Rhodococcus opacus (strain B4) RepID=C1AZH6_RHOOB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH54247.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (strain B4).;"
PLM1_100_b1_sep16_scaffold_5020_16
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(10371..10577)
-----------------
DNA (207bp)
protein (69aa)
Tax=RBG_16_Actinobacteria_67_10_curated
PLM1_100_b1_sep16_scaffold_5020_17
unknown

Not on your lists

10698..10976
-----------------
DNA (279bp)
protein (93aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_5020_18
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11017..11775
-----------------
DNA (759bp)
protein (253aa)
Uncharacterized protein Tax=Sorangium cellulosum So0157-2 RepID=S4YBX2_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP41851.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
PLM1_100_b1_sep16_scaffold_5020_19
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(11782..12528)
-----------------
DNA (747bp)
protein (249aa)
Putative uncharacterized protein Tax=Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 / NBRC 16125 / INA 9442) RepID=D9SZ38_MICAI
hypothetical protein
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM1_100_b1_sep16_scaffold_5020_20
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(12521..12973)
-----------------
DNA (453bp)
protein (151aa)
ECF subfamily RNA polymerase sigma-24 factor bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
ECF subfamily RNA polymerase sigma-24 subunit
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM1_100_b1_sep16_scaffold_5020_21
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13024..13656
-----------------
DNA (633bp)
protein (211aa)
Class II aldolase/adducin family protein Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3Q0W8_STANL
class II aldolase/adducin family protein
Class II aldolase/adducin family protein {ECO:0000313|EMBL:ADD43718.1}; species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
PLM1_100_b1_sep16_scaffold_5020_22
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

13666..14115
-----------------
DNA (450bp)
protein (150aa)
Transport-associated Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C893_SPHTD
transport-associated
Transport-associated {ECO:0000313|EMBL:ACZ40036.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM1_100_b1_sep16_scaffold_5020_23
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(14158..14400)
-----------------
DNA (243bp)
protein (81aa)
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_100_b1_sep16_scaffold_5020_24
unknown

Not on your lists

comp(14493..14654)
-----------------
DNA (162bp)
protein (54aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_5020_25
unknown

Not on your lists

comp(14651..15169)
-----------------
DNA (519bp)
protein (173aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_5020_26
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(15306..16592)
-----------------
DNA (1287bp)
protein (429aa)
Protease-associated PA domain protein Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AYV9_HERA2
protease domain-containing protein
Protease-associated PA domain protein {ECO:0000313|EMBL:ABX06999.1}; Flags: Precursor;; species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
Displaying 26 items

View Taxonomy