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PLM4_90_b1_sep16_scaffold_1117

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b1_sep16_scaffold_1117_1
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1..1182
DNA (1182bp) protein (394aa)
ABC-type branched-chain amino acid transport system, periplasmic component bin=GWA2_Methylomirabilis_73_35 species=Hylemonella gracilis genus=Hylemonella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
branched-chain amino acid ABC transporter substrate-binding protein
Tax=RBG_16_Deltaproteobacteria_48_10_curated
PLM4_90_b1_sep16_scaffold_1117_2
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1310..2185
DNA (876bp) protein (292aa)
High-affinity branched-chain amino acid transporter permease LivH bin=bin7_NC10_sister species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
High-affinity branched-chain amino acid transporter permease LivH
Tax=RBG_13_Deltaproteobacteria_47_9_curated
PLM4_90_b1_sep16_scaffold_1117_3
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2301..3251
DNA (951bp) protein (317aa)
High-affinity branched-chain amino acid transport ATP-binding protein braF (Modular protein) Tax=Bradyrhizobium sp. STM 3843 RepID=H0TGD2_9BRAD bin=RBG2 species=Bradyrhizobium sp. STM 3843 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG2 organism_group=Chloroflexi
ABC transporter permease
Tax=RBG_13_Deltaproteobacteria_47_9_curated
PLM4_90_b1_sep16_scaffold_1117_4
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3238..3957
DNA (720bp) protein (240aa)
monosaccharide-transporting ATPase (EC:3.6.3.17)
High-affinity branched-chain amino acid transport ATP-binding protein Tax=environmental samples RepID=Q649D1_9ARCH bin=RBG2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacillariophyta tax=RBG2 organism_group=Chloroflexi
Tax=RBG_13_Deltaproteobacteria_47_9_curated
PLM4_90_b1_sep16_scaffold_1117_5
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3962..4666
DNA (705bp) protein (235aa)
ABC transporter, ATP-binding protein Tax=delta proteobacterium NaphS2 RepID=D8F6G4_9DELT bin=RBG2 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG2 organism_group=Chloroflexi
ABC transporter-like protein
Tax=RBG_13_Deltaproteobacteria_47_9_curated
PLM4_90_b1_sep16_scaffold_1117_6
Mesorhizobium sp. LSJC265A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4836..5570
DNA (735bp) protein (245aa)
UPI0003CF46F0 related cluster Tax=unknown RepID=UPI0003CF46F0
ABC transporter {ECO:0000313|EMBL:ESX14766.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC265A00.;"
ABC transporter
PLM4_90_b1_sep16_scaffold_1117_7
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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5554..6288
DNA (735bp) protein (245aa)
UPI0003CEEC4E related cluster Tax=unknown RepID=UPI0003CEEC4E
ABC transporter
Tax=RBG_13_Deltaproteobacteria_53_10_curated
PLM4_90_b1_sep16_scaffold_1117_8
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6292..6546
DNA (255bp) protein (85aa)
Inner-membrane translocator Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y861_MESOW
inner-membrane translocator
Uncharacterized protein {ECO:0000313|EMBL:ESY66854.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
PLM4_90_b1_sep16_scaffold_1117_9
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

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6617..7396
DNA (780bp) protein (260aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100)
hypothetical protein Tax=Sphingobium sp. YL23 RepID=UPI0003AA90CF
Tax=BJP_IG2069_Desfulfarculales_53_13
PLM4_90_b1_sep16_scaffold_1117_10
RBG_16_Chloroflexi_60_22_curated, Chloroflexi, Bacteria

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7711..9570
DNA (1860bp) protein (620aa)
UPI0003CFCE3D related cluster Tax=unknown RepID=UPI0003CFCE3D
inner-membrane translocator
Tax=RBG_16_Chloroflexi_60_22_curated
PLM4_90_b1_sep16_scaffold_1117_11
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

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9711..10931
DNA (1221bp) protein (407aa)
UPI0003CDDA5B related cluster Tax=unknown RepID=UPI0003CDDA5B
Extracellular ligand-binding receptor
Tax=BJP_IG2069_Desfulfarculales_53_13
PLM4_90_b1_sep16_scaffold_1117_12
unknown

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comp(10932..11186)
DNA (255bp) protein (85aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_1117_13
RBG_13_Deltaproteobacteria_52_11b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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11409..12173
DNA (765bp) protein (255aa)
Short-chain dehydrogenase/reductase SDR Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M8F3_GEODF
short-chain dehydrogenase/reductase SDR
Tax=RBG_13_Deltaproteobacteria_52_11b_curated
PLM4_90_b1_sep16_scaffold_1117_14
unknown

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12350..12514
DNA (165bp) protein (55aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_1117_15
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12642..13787
DNA (1146bp) protein (382aa)
pyruvate carboxylase subunit B; K01571 oxaloacetate decarboxylase, alpha subunit [EC:4.1.1.3] bin=bin7_NC10_sister species=Roseovarius sp. 217 genus=Roseovarius taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
carboxyltransferase
Tax=RBG_13_Deltaproteobacteria_47_9_curated
PLM4_90_b1_sep16_scaffold_1117_16
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13741..14307
DNA (567bp) protein (189aa)
det:DET0119 oadA; pyruvate carboxylase subunit B (EC:4.1.1.3); K01571 oxaloacetate decarboxylase, alpha subunit [EC:4.1.1.3] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
pyruvate carboxylase subunit B
Tax=RBG_13_Deltaproteobacteria_47_9_curated
PLM4_90_b1_sep16_scaffold_1117_17
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14462..15946
DNA (1485bp) protein (495aa)
det:DET0120 accC; pyruvate carboxylase subunit A (EC:6.4.1.1) bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
pycA; pyruvate carboxyl transferase subunit A (EC:6.4.1.1)
Tax=RBG_13_Deltaproteobacteria_47_9_curated
PLM4_90_b1_sep16_scaffold_1117_18
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16001..16714
DNA (714bp) protein (238aa)
3-oxoacid CoA-transferase subunit A (EC:2.8.3.5); K01028 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
3-oxoadipate CoA-transferase
Tax=RBG_13_Deltaproteobacteria_47_9_curated
PLM4_90_b1_sep16_scaffold_1117_19
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16711..17373
DNA (663bp) protein (221aa)
butyryl-CoA:acetate CoA transferase (EC:2.8.3.8)
Succinyl-CoA:3-ketoacid-CoA transferase Tax=Brevibacillus panacihumi W25 RepID=V6ME67_9BACL
Tax=RBG_13_Deltaproteobacteria_47_9_curated
PLM4_90_b1_sep16_scaffold_1117_20
RBG_13_Chloroflexi_51_52_curated, Chloroflexi, Bacteria

Not on your lists

17454..18467
DNA (1014bp) protein (338aa)
Uncharacterized protein Tax=delta proteobacterium NaphS2 RepID=D8F4P6_9DELT
hypothetical protein
Tax=RBG_13_Chloroflexi_51_52_curated
Displaying 20 items

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