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PLM4_90_b1_sep16_scaffold_86

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b1_sep16_scaffold_86_1
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1..975
DNA (975bp) protein (325aa)
phenylhydantoinase (EC:3.5.2.2)
Dihydropyrimidinase bin=GWB2_Chloroflexi_54_36 species=unknown genus=Pusillimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_90_b1_sep16_scaffold_86_2
Flexistipes sinusarabici, Flexistipes, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

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1330..2190
DNA (861bp) protein (287aa)
ABC-type transporter, integral membrane subunit Tax=Flexistipes sinusarabici (strain DSM 4947 / MAS 10) RepID=F8E8R1_FLESM
ABC transporter
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AEI15184.1}; species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae; Flexistipes.;" source="Flexistipes sinusarabici (strain DSM 4947 / MAS 10).;"
PLM4_90_b1_sep16_scaffold_86_3

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2271..3242
DNA (972bp) protein (324aa)
High-affinity branched-chain amino acid transport system permease protein livm Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YK43_THEYD
Uncharacterized protein {ECO:0000313|EMBL:KKK47438.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
high-affinity branched-chain amino acid transport system permease LivM
PLM4_90_b1_sep16_scaffold_86_4
RBG_19FT_COMBO_JS1_35_14_curated, Atribacteria, Bacteria

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3239..4009
DNA (771bp) protein (257aa)
monosaccharide-transporting ATPase (EC:3.6.3.17)
Monosaccharide-transporting ATPase Tax=Flexistipes sinusarabici (strain DSM 4947 / MAS 10) RepID=F8E8Q9_FLESM
Tax=RBG_19FT_COMBO_JS1_35_14_curated
PLM4_90_b1_sep16_scaffold_86_5
Candidatus Korarchaeum cryptofilum, Candidatus Korarchaeum, Korarchaeota, Archaea

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3996..4703
DNA (708bp) protein (236aa)
ABC-type branched-chain amino acid transport system, ATPase component Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L543_KORCO
branched-chain amino acid ABC transporter ATPase
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:ACB07572.1}; species="Archaea; Korarchaeota; Candidatus Korarchaeum.;" source="Korarchaeum cryptofilum (strain OPF8).;"
PLM4_90_b1_sep16_scaffold_86_6

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4716..5918
DNA (1203bp) protein (401aa)
Leu/ile/val-binding protein Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YK45_THEYD
Uncharacterized protein {ECO:0000313|EMBL:KKK93679.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
leu/ile/val-binding protein
PLM4_90_b1_sep16_scaffold_86_7
unknown

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comp(6228..6746)
DNA (519bp) protein (173aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_86_8

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6950..8773
DNA (1824bp) protein (608aa)
Succinate dehydrogenase (ubiquinone) (EC:1.3.5.1)
Succinate dehydrogenase (Ubiquinone) Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D7M7_METSW
Marine sediment metagenome DNA, contig: S06H3_S17172 {ECO:0000313|EMBL:GAI40589.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM4_90_b1_sep16_scaffold_86_9
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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8776..9105
DNA (330bp) protein (110aa)
Fumarate reductase iron-sulfur subunit Tax=Gallibacterium anatis (strain UMN179) RepID=F4HE62_GALAU
fumarate reductase iron-sulfur subunit
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_90_b1_sep16_scaffold_86_10
RBG_16_Chloroflexi_60_22_curated, Chloroflexi, Bacteria

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9355..11079
DNA (1725bp) protein (575aa)
L-aspartate oxidase (EC:1.4.3.16)
hypothetical protein Tax=Burkholderia sp. WSM4176 RepID=UPI00037D7FE5
Tax=RBG_16_Chloroflexi_60_22_curated
PLM4_90_b1_sep16_scaffold_86_11
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

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11169..11945
DNA (777bp) protein (259aa)
238aa long hypothetical arylmalonate decarboxylase Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=O58713_PYRHO
arylmalonate decarboxylase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM4_90_b1_sep16_scaffold_86_12
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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12111..13085
DNA (975bp) protein (325aa)
Extra-cytoplasmic solute receptor family protein 117 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HI44_ACHXA
extra-cytoplasmic solute receptor family protein 117
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_90_b1_sep16_scaffold_86_13
Methanoculleus sp. MH98A, Methanoculleus, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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13265..14128
DNA (864bp) protein (288aa)
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D8B6_METSW
4Fe-4S ferredoxin {ECO:0000313|EMBL:KDE55769.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanoculleus.;" source="Methanoculleus sp. MH98A.;"
4Fe-4S ferredoxin
PLM4_90_b1_sep16_scaffold_86_14
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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14306..14782
DNA (477bp) protein (159aa)
hypothetical protein; K07794 putative tricarboxylic transport membrane protein bin=bin7_NC10_sister species=Afipia broomeae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_90_b1_sep16_scaffold_86_15
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

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14796..16289
DNA (1494bp) protein (498aa)
hypothetical protein; K07793 putative tricarboxylic transport membrane protein bin=bin7_NC10_sister species=Afipia broomeae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=BJP_IG2069_Desfulfarculales_53_13
PLM4_90_b1_sep16_scaffold_86_16
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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16416..17357
DNA (942bp) protein (314aa)
Iron-sulfur cluster-binding oxidoreductase Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5E9Z1_GEOBB
iron-sulfur cluster-binding oxidoreductase
Tax=RBG_16_Deltaproteobacteria_49_23_curated
PLM4_90_b1_sep16_scaffold_86_17
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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17354..18670
DNA (1317bp) protein (439aa)
hypothetical protein Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B7777F
LuxR family transcriptional regulator
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b1_sep16_scaffold_86_18
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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19009..20328
DNA (1320bp) protein (440aa)
Putative uncharacterized protein Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XZY6_PEDHD
Uncharacterized protein {ECO:0000313|EMBL:KGY25420.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
hypothetical protein
PLM4_90_b1_sep16_scaffold_86_19
RBG_16_Chloroflexi_60_22_curated, Chloroflexi, Bacteria

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20653..21363
DNA (711bp) protein (237aa)
hypothetical protein Tax=Burkholderia kururiensis RepID=UPI00034CA4E3
hypothetical protein
Tax=RBG_16_Chloroflexi_60_22_curated
PLM4_90_b1_sep16_scaffold_86_20
RBG_16_Chloroflexi_60_22_curated, Chloroflexi, Bacteria

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21339..21845
DNA (507bp) protein (169aa)
hypothetical protein Tax=Burkholderia kururiensis RepID=UPI00034CA4E3
Tax=RBG_16_Chloroflexi_60_22_curated
PLM4_90_b1_sep16_scaffold_86_21
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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22336..23328
DNA (993bp) protein (331aa)
Uncharacterized protein Tax=Pelosinus fermentans JBW45 RepID=I8TP47_9FIRM
hypothetical protein
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_90_b1_sep16_scaffold_86_22
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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23349..23825
DNA (477bp) protein (159aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Afipia broomeae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_90_b1_sep16_scaffold_86_23
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23884..25335
DNA (1452bp) protein (484aa)
hypothetical protein; K07793 putative tricarboxylic transport membrane protein bin=bin7_NC10_sister species=Afipia broomeae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=BJP_IG2069_Desfulfarculales_53_13
PLM4_90_b1_sep16_scaffold_86_24
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25637..26527
DNA (891bp) protein (297aa)
4Fe-4S ferredoxin, iron-sulfur binding protein bin=GWF2_Syntrophobacterales_56_9 species=Methanosphaerula palustris genus=Methanosphaerula taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
iron-sulfur cluster-binding protein
Tax=RBG_16_Deltaproteobacteria_49_23_curated
PLM4_90_b1_sep16_scaffold_86_25
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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27186..28145
DNA (960bp) protein (320aa)
hypothetical protein Tax=Paenibacillus terrigena RepID=UPI00037C788F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJE48176.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
Displaying 25 items

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