ggKbase home page

PLM4_90_b1_sep16_scaffold_2251

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b1_sep16_scaffold_2251_1
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..449)
DNA (447bp) protein (149aa)
Collagen triple helix repeat Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HI79_ANADF
Collagen triple helix repeat {ECO:0000313|EMBL:ABS28425.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
triple helix repeat-containing collagen
PLM4_90_b1_sep16_scaffold_2251_2
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1379..2770)
DNA (1392bp) protein (464aa)
aor6; tungsten-containing aldehyde ferredoxin oxidoreductase Aor (EC:1.2.7.5)
hypothetical protein Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00037F1E23
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM4_90_b1_sep16_scaffold_2251_3
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2770..3039)
DNA (270bp) protein (90aa)
hypothetical protein Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00037F1E23
aldehyde:ferredoxin oxidoreductase
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_90_b1_sep16_scaffold_2251_4
unknown

Not on your lists

3283..3417
DNA (135bp) protein (45aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_2251_5
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3401..3778
DNA (378bp) protein (126aa)
Glyoxalase/bleomycin resistance protein/dioxygenase Tax=Geobacter sp. (strain M21) RepID=C6E8B0_GEOSM
glyoxalase/bleomycin resistance protein/dioxygenase
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM4_90_b1_sep16_scaffold_2251_6
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3920..4894
DNA (975bp) protein (325aa)
Extra-cytoplasmic Solute Receptor bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=BJP_IG2069_Desfulfarculales_53_13
PLM4_90_b1_sep16_scaffold_2251_7
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5031..6182)
DNA (1152bp) protein (384aa)
YqhT protein bin=GWD2_Deltaproteobacteria_55_8 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
peptidase M24
Tax=RBG_13_Deltaproteobacteria_53_10_curated
PLM4_90_b1_sep16_scaffold_2251_8
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6198..7064)
DNA (867bp) protein (289aa)
Putative uncharacterized protein Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z4J7_DESAT
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM4_90_b1_sep16_scaffold_2251_9
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7007..8452)
DNA (1446bp) protein (482aa)
Integral membrane sensor signal transduction histidine kinase bin=GWC2_Nitrospirae-rel_56_14 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
integral membrane sensor signal transduction histidine kinase
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM4_90_b1_sep16_scaffold_2251_10
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8670..9026)
DNA (357bp) protein (119aa)
Uncharacterized domain 1 bin=GWC2_Syntrophus__56_31 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_90_b1_sep16_scaffold_2251_11
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9056..9403)
DNA (348bp) protein (116aa)
Hydrolase, putative bin=GWF2_Geobacter_54_21 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
class I peptide chain release factor
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM4_90_b1_sep16_scaffold_2251_12
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9477..10157)
DNA (681bp) protein (227aa)
PhoU family transcriptional regulator Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B7A572
phosphate uptake regulator PhoU
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM4_90_b1_sep16_scaffold_2251_13
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10214..10975)
DNA (762bp) protein (254aa)
ABC transporter related Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KRG8_CLOPH
ABC transporter
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM4_90_b1_sep16_scaffold_2251_14
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10985..11773)
DNA (789bp) protein (263aa)
Phosphate ABC transporter, inner membrane subunit PstA bin=CD_OP8_4m species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
phosphate ABC transporter, inner membrane subunit PstA
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM4_90_b1_sep16_scaffold_2251_15
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11770..12222)
DNA (453bp) protein (151aa)
Phosphate ABC transporter, inner membrane subunit PstC Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KRG6_CLOPH
phosphate ABC transporter, inner membrane subunit PstC
Tax=RBG_16_Deltaproteobacteria_47_11_curated
Displaying 15 items

View Taxonomy