ggKbase home page

PLM4_90_b1_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b1_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b1_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 401-450 of 889 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b1_sep16_scaffold_7198
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (55.56%)
9 8719 bp 48.21 16.40 83.30
PLM4_90_b1_sep16_scaffold_14272
Species: RBG_16_Deltaproteobacteria_48_10_curated (66.67%)
6 4119 bp 51.20 11.11 83.32
PLM4_90_b1_sep16_scaffold_2167
Class: Deltaproteobacteria (53.85%)
13 8803 bp 46.73 8.66 83.39
PLM4_90_b1_sep16_scaffold_18690
Class: Deltaproteobacteria (100%)
4 2924 bp 44.08 6.31 83.41
PLM4_90_b1_sep16_scaffold_9039
Species: RBG_16_Deltaproteobacteria_48_10_curated (75%)
4 4157 bp 49.63 9.20 83.43
PLM4_90_b1_sep16_scaffold_7054
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
2 5374 bp 54.50 15.69 83.46
PLM4_90_b1_sep16_scaffold_7905
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 3432 bp 46.62 12.54 83.48
PLM4_90_b1_sep16_scaffold_876
Class: Deltaproteobacteria (100%)
11 9233 bp 47.20 19.07 83.50
PLM4_90_b1_sep16_scaffold_10875
Class: Deltaproteobacteria (80%)
5 2927 bp 44.35 10.86 83.53
PLM4_90_b1_sep16_scaffold_11654
Species: RBG_13_Deltaproteobacteria_47_9_curated (100%)
3 2826 bp 47.10 13.85 83.55
PLM4_90_b1_sep16_scaffold_11969
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
2 2790 bp 49.18 13.55 83.55
PLM4_90_b1_sep16_scaffold_11294
Class: Deltaproteobacteria (75%)
4 3924 bp 48.60 9.98 83.56
PLM4_90_b1_sep16_scaffold_8992
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (66.67%)
3 3218 bp 45.93 15.48 83.62
PLM4_90_b1_sep16_scaffold_30683
Class: Deltaproteobacteria (66.67%)
3 2608 bp 48.54 14.21 83.63
PLM4_90_b1_sep16_scaffold_4329
Domain: Bacteria (80%)
5 4609 bp 50.92 9.99 83.64
PLM4_90_b1_sep16_scaffold_14176
Species: RBG_13_Deltaproteobacteria_53_10_curated (66.67%)
3 2558 bp 51.41 11.08 83.74
PLM4_90_b1_sep16_scaffold_9489
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
4 3130 bp 42.84 10.54 83.77
PLM4_90_b1_sep16_scaffold_8076
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
2 3395 bp 46.60 5.35 83.77
PLM4_90_b1_sep16_scaffold_7056
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
6 5514 bp 47.10 14.12 83.79
PLM4_90_b1_sep16_scaffold_11287
Species: RBG_16_Deltaproteobacteria_48_10_curated (83.33%)
6 4893 bp 48.44 13.55 83.81
PLM4_90_b1_sep16_scaffold_5896
Class: Deltaproteobacteria (60%)
5 3972 bp 45.87 13.18 83.84
PLM4_90_b1_sep16_scaffold_16379
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (66.67%)
6 4744 bp 47.51 13.22 83.85
PLM4_90_b1_sep16_scaffold_29778
Species: RBG_16_Deltaproteobacteria_48_10_curated (75%)
4 3018 bp 54.37 10.79 83.90
PLM4_90_b1_sep16_scaffold_6373
Class: Deltaproteobacteria (60%)
5 5061 bp 45.09 12.69 83.94
PLM4_90_b1_sep16_scaffold_20784
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (75%)
4 3289 bp 46.03 14.59 84.01
PLM4_90_b1_sep16_scaffold_10248
Class: Deltaproteobacteria (50%)
6 3559 bp 44.56 13.02 84.07
PLM4_90_b1_sep16_scaffold_13842
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (75%)
4 2590 bp 41.58 7.41 84.09
PLM4_90_b1_sep16_scaffold_1090
Class: Deltaproteobacteria (71.43%)
7 8542 bp 48.17 17.49 84.11
PLM4_90_b1_sep16_scaffold_33168
Species: BJP_IG2069_Desfulfarculales_53_13 (50%)
4 3545 bp 44.37 9.52 84.12
PLM4_90_b1_sep16_scaffold_8300
Class: Deltaproteobacteria (83.33%)
6 3348 bp 46.57 10.66 84.14
PLM4_90_b1_sep16_scaffold_7521
Phylum: Proteobacteria (57.14%)
7 4719 bp 49.33 9.44 84.17
PLM4_90_b1_sep16_scaffold_8053
Domain: Bacteria (80%)
5 4479 bp 50.48 12.53 84.19
PLM4_90_b1_sep16_scaffold_14651
Class: Deltaproteobacteria (66.67%)
6 2515 bp 44.77 12.05 84.21
PLM4_90_b1_sep16_scaffold_1003
Class: Deltaproteobacteria (55.56%)
9 8809 bp 41.76 11.44 84.25
PLM4_90_b1_sep16_scaffold_24031
Class: Deltaproteobacteria (100%)
6 3331 bp 50.59 6.57 84.30
PLM4_90_b1_sep16_scaffold_17221
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (75%)
4 2604 bp 47.85 14.69 84.33
PLM4_90_b1_sep16_scaffold_2344
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (83.33%)
6 6125 bp 47.71 10.31 84.34
PLM4_90_b1_sep16_scaffold_7761
Class: Deltaproteobacteria (83.33%)
6 4978 bp 43.99 10.52 84.37
PLM4_90_b1_sep16_scaffold_36995
Class: Deltaproteobacteria (50%)
4 3949 bp 48.72 7.18 84.40
PLM4_90_b1_sep16_scaffold_9248
Class: Phycisphaerae (66.67%)
3 3170 bp 58.90 11.64 84.42
PLM4_90_b1_sep16_scaffold_10113
Class: Deltaproteobacteria (75%)
8 5814 bp 51.03 11.53 84.42
PLM4_90_b1_sep16_scaffold_383
Species: RBG_16_Deltaproteobacteria_47_11_curated (83.33%)
12 13479 bp 48.26 16.05 84.46
PLM4_90_b1_sep16_scaffold_14048
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (75%)
4 2954 bp 42.04 15.39 84.50
PLM4_90_b1_sep16_scaffold_13531
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
2 2620 bp 48.59 6.53 84.50
PLM4_90_b1_sep16_scaffold_8910
Domain: Bacteria (100%)
3 3232 bp 51.36 9.24 84.56
PLM4_90_b1_sep16_scaffold_4651
Species: RBG_13_Deltaproteobacteria_52_11b_curated (71.43%)
7 6243 bp 49.30 17.40 84.57
PLM4_90_b1_sep16_scaffold_5538
Class: Deltaproteobacteria (93.33%)
15 12251 bp 47.56 14.19 84.58
PLM4_90_b1_sep16_scaffold_22124
Class: Deltaproteobacteria (100%)
3 3099 bp 48.40 11.23 84.61
PLM4_90_b1_sep16_scaffold_7512
Species: RBG_16_Deltaproteobacteria_48_10_curated (70%)
10 6278 bp 48.52 14.12 84.68
PLM4_90_b1_sep16_scaffold_1946
Species: RBG_16_Deltaproteobacteria_47_11_curated (57.14%)
7 6704 bp 48.91 17.70 84.71
Displaying items 401-450 of 889 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.