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PLM4_90_b1_sep16_scaffold_248

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Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b1_sep16_scaffold_248_1
CG_Delta_05, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..2018)
DNA (2016bp) protein (672aa)
Organic solvent tolerance protein bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
organic solvent tolerance protein
Tax=CG_Delta_05
PLM4_90_b1_sep16_scaffold_248_2
CG_Delta_05, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2018..2491)
DNA (474bp) protein (158aa)
folylpolyglutamate synthase / dihydrofolate synthase (EC:6.3.2.12 6.3.2.17)
Folylpolyglutamate synthase / dihydrofolate synthase bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=CG_Delta_05
PLM4_90_b1_sep16_scaffold_248_3
CG_Delta_05, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2488..3183)
DNA (696bp) protein (232aa)
folylpolyglutamate synthase / dihydrofolate synthase (EC:6.3.2.12 6.3.2.17)
Folylpolyglutamate synthase / dihydrofolate synthase bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
Tax=CG_Delta_05
PLM4_90_b1_sep16_scaffold_248_4
BJP_IG2069_Syntrophobacterales_47_18, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3224..3991)
DNA (768bp) protein (256aa)
Metallo-beta-lactamase superfamily protein Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LQC6_SYNAS
metallo-beta-lactamase superfamily protein
Tax=BJP_IG2069_Syntrophobacterales_47_18
PLM4_90_b1_sep16_scaffold_248_5
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4307..4567)
DNA (261bp) protein (87aa)
Translation elongation factor-like protein bin=GWC2_Syntrophus__56_31 species=Dehalococcoides mccartyi genus=Dehalococcoides taxon_order=Dehalococcoidales taxon_class=Dehalococcoidia phylum=Chloroflexi tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
elongation factor Tu, domain 2
Tax=BJP_IG2102_Syntrophobacterales_60_12
PLM4_90_b1_sep16_scaffold_248_6
Desulfuromonas acetoxidans, Desulfuromonas, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4762..5160)
DNA (399bp) protein (133aa)
50S ribosomal protein L17 bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Desulfuromonadaceae; Desulfuromonas.;" source="Desulfuromonas acetoxidans DSM 684.;"
50S ribosomal protein L17
PLM4_90_b1_sep16_scaffold_248_7
RBG_16_Deltaproteobacteria_58_17_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5196..6215)
DNA (1020bp) protein (340aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=RBG_16_Deltaproteobacteria_58_17_curated
PLM4_90_b1_sep16_scaffold_248_8
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6262..6888)
DNA (627bp) protein (209aa)
30S ribosomal protein S4 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
30S ribosomal protein S4
Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
PLM4_90_b1_sep16_scaffold_248_9
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7002..7394)
DNA (393bp) protein (131aa)
30S ribosomal protein S11 Tax=Syntrophus aciditrophicus (strain SB) RepID=RS11_SYNAS
30S ribosomal protein S11
30S ribosomal protein S11 {ECO:0000255|HAMAP-Rule:MF_01310}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
PLM4_90_b1_sep16_scaffold_248_10
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7427..7723)
DNA (297bp) protein (99aa)
30S ribosomal protein S13 Tax=Syntrophus aciditrophicus (strain SB) RepID=RS13_SYNAS
rpsM; 30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000255|HAMAP-Rule:MF_01315}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
PLM4_90_b1_sep16_scaffold_248_11
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7982..8200)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 Tax=Syntrophus aciditrophicus (strain SB) RepID=IF1_SYNAS
protein translation initiation factor 1
Translation initiation factor IF-1 {ECO:0000255|HAMAP-Rule:MF_00075}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
PLM4_90_b1_sep16_scaffold_248_12
CG_Delta_05, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8407..9192)
DNA (786bp) protein (262aa)
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=CG_Delta_05
PLM4_90_b1_sep16_scaffold_248_13
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9176..10483)
DNA (1308bp) protein (436aa)
secY; preprotein translocase subunit SecY
Protein translocase subunit SecY bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
PLM4_90_b1_sep16_scaffold_248_14
CG_Delta_05, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10485..10928)
DNA (444bp) protein (148aa)
50S ribosomal protein L15 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
50S ribosomal protein L15
Tax=CG_Delta_05
PLM4_90_b1_sep16_scaffold_248_15
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10925..11122)
DNA (198bp) protein (66aa)
50S ribosomal protein L30 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
50S ribosomal protein L30
Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
PLM4_90_b1_sep16_scaffold_248_16
GWC2_Syntrophus_56_31_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11211..11705)
DNA (495bp) protein (165aa)
30S ribosomal protein S5 Tax=uncultured bacterium RepID=K1Z199_9BACT
30S ribosomal protein S5
Tax=GWC2_Syntrophus_56_31_curated
PLM4_90_b1_sep16_scaffold_248_17
CG_Delta_05, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11744..12100)
DNA (357bp) protein (119aa)
50S ribosomal protein L18 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
50S ribosomal protein L18
Tax=CG_Delta_05
PLM4_90_b1_sep16_scaffold_248_18
RBG_16_Deltaproteobacteria_58_17_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12155..12310)
DNA (156bp) protein (52aa)
Suspect SCG annotation. See neighboring gene [PLM4_90_b1_sep16_scaffold_248_19].
50S ribosomal protein L6 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
50S ribosomal protein L6
Tax=RBG_16_Deltaproteobacteria_58_17_curated
PLM4_90_b1_sep16_scaffold_248_19
RBG_16_Deltaproteobacteria_58_17_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12331..12549)
DNA (219bp) protein (73aa)
50S ribosomal protein L6 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
50S ribosomal protein L6
Tax=RBG_16_Deltaproteobacteria_58_17_curated
PLM4_90_b1_sep16_scaffold_248_20
GWC2_Syntrophus_56_31_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12594..12995)
DNA (402bp) protein (134aa)
30S ribosomal protein S8 bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
30S ribosomal protein S8
Tax=GWC2_Syntrophus_56_31_curated
PLM4_90_b1_sep16_scaffold_248_21
CG_Delta_05, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13236..13811)
DNA (576bp) protein (192aa)
50S ribosomal protein L5 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
rplE; 50S ribosomal protein L5
Tax=CG_Delta_05
PLM4_90_b1_sep16_scaffold_248_22
CG_Syntroph_01, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13787..14107)
DNA (321bp) protein (107aa)
50S ribosomal protein L24 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
50S ribosomal protein L24
Tax=CG_Syntroph_01
PLM4_90_b1_sep16_scaffold_248_23
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14131..14499)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
50S ribosomal protein L14
Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
PLM4_90_b1_sep16_scaffold_248_24
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14578..14835)
DNA (258bp) protein (86aa)
30S ribosomal protein S17 bin=GWC2_Syntrophobacterales_56_13 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
30S ribosomal protein S17
Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
PLM4_90_b1_sep16_scaffold_248_25
RBG_16_Deltaproteobacteria_44_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14832..15029)
DNA (198bp) protein (66aa)
50S ribosomal protein L29 bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
50S ribosomal protein L29
Tax=RBG_16_Deltaproteobacteria_44_11_curated
PLM4_90_b1_sep16_scaffold_248_26
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15026..15442)
DNA (417bp) protein (139aa)
50S ribosomal protein L16 Tax=Smithella sp. ME-1 RepID=V4EPJ6_9DELT
rplP; 50S ribosomal protein L16
Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
PLM4_90_b1_sep16_scaffold_248_27
GWC2_Syntrophus_56_31_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15599..16252)
DNA (654bp) protein (218aa)
30S ribosomal protein S3 bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
rpsC; 30S ribosomal protein S3
Tax=GWC2_Syntrophus_56_31_curated
PLM4_90_b1_sep16_scaffold_248_28
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16272..16604)
DNA (333bp) protein (111aa)
50S ribosomal protein L22 bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
50S ribosomal protein L22
Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
PLM4_90_b1_sep16_scaffold_248_29
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16644..16925)
DNA (282bp) protein (94aa)
30S ribosomal protein S19 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
30S ribosomal protein S19
30S ribosomal protein S19 {ECO:0000255|HAMAP-Rule:MF_00531}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
PLM4_90_b1_sep16_scaffold_248_30
GWC2_Syntrophus_56_31_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16929..17750)
DNA (822bp) protein (274aa)
50S ribosomal protein L2 bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
rplB; 50S ribosomal protein L2
Tax=GWC2_Syntrophus_56_31_curated
Displaying items 1-30 of 69 in total

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