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PLM4_90_b1_sep16_scaffold_672

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b1_sep16_scaffold_672_1
BJP_08E140C01_Syntrophobacterales_43_19, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(890..1723)
DNA (834bp) protein (278aa)
lipid A biosynthesis lauroyl acyltransferase (EC:2.3.1.-)
Lipid A biosynthesis lauroyl acyltransferase bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=BJP_08E140C01_Syntrophobacterales_43_19
PLM4_90_b1_sep16_scaffold_672_2

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2294..2668
DNA (375bp) protein (125aa)
phosphoribosyl-AMP cyclohydrolase (EC:3.5.4.19)
Marine sediment metagenome DNA, contig: S12H4_S07076 {ECO:0000313|EMBL:GAI88913.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Phosphoribosyl-AMP cyclohydrolase bin=GWF2_Syntrophobacterales_56_9 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
PLM4_90_b1_sep16_scaffold_672_3
CG_Syntroph_01, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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2665..3537
DNA (873bp) protein (291aa)
ATP phosphoribosyltransferase (EC:2.4.2.17)
ATP phosphoribosyltransferase bin=GWC2_Syntrophobacterales_56_13 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=CG_Syntroph_01
PLM4_90_b1_sep16_scaffold_672_4
CG_Delta_05, Deltaproteobacteria, Proteobacteria, Bacteria

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3552..4139
DNA (588bp) protein (196aa)
imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase Tax=uncultured bacterium RepID=K1WXI7_9BACT
Tax=CG_Delta_05
PLM4_90_b1_sep16_scaffold_672_5
CG_Delta_05, Deltaproteobacteria, Proteobacteria, Bacteria

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4136..4876
DNA (741bp) protein (247aa)
Hypothetical membrane protein bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
hypothetical protein
Tax=CG_Delta_05
PLM4_90_b1_sep16_scaffold_672_6
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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4963..5688
DNA (726bp) protein (242aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000255|HAMAP-Rule:MF_01014}; EC=5.3.1.16 {ECO:0000255|HAMAP-Rule:MF_01014};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000255|HAMAP-Rule:MF_01014}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase Tax=Syntrophus aciditrophicus (strain SB) RepID=HIS4_SYNAS
PLM4_90_b1_sep16_scaffold_672_7
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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5765..6109
DNA (345bp) protein (115aa)
Hit family hydrolase bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
hit family hydrolase
Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
PLM4_90_b1_sep16_scaffold_672_8
BJP_IG2069_Syntrophobacterales_46_30, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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6184..6630
DNA (447bp) protein (149aa)
GatB/yqey domain protein bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
gatB/yqey domain-containing protein
Tax=BJP_IG2069_Syntrophobacterales_46_30
PLM4_90_b1_sep16_scaffold_672_9
CG_Delta_05, Deltaproteobacteria, Proteobacteria, Bacteria

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6695..8476
DNA (1782bp) protein (594aa)
DNA primase (EC:2.7.7.-)
DNA primase bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=CG_Delta_05
PLM4_90_b1_sep16_scaffold_672_10
CG_Syntroph_01, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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8534..10282
DNA (1749bp) protein (583aa)
RNA polymerase sigma factor bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
RNA polymerase sigma factor
Tax=CG_Syntroph_01
PLM4_90_b1_sep16_scaffold_672_trna_1
unknown

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10361..10433
DNA (73bp)
transferRNA Met
PLM4_90_b1_sep16_scaffold_672_11
CG_Delta_05, Deltaproteobacteria, Proteobacteria, Bacteria

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10709..11431
DNA (723bp) protein (241aa)
Zn binding protein Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LRB2_SYNAS
Zn binding protein
Tax=CG_Delta_05
PLM4_90_b1_sep16_scaffold_672_12
CG_Delta_05, Deltaproteobacteria, Proteobacteria, Bacteria

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11424..11876
DNA (453bp) protein (151aa)
Ribonuclease H Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RBX0_DESPD
ribonuclease H
Tax=CG_Delta_05
PLM4_90_b1_sep16_scaffold_672_13
CG_Delta_05, Deltaproteobacteria, Proteobacteria, Bacteria

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12346..13878
DNA (1533bp) protein (511aa)
SpoIID/LytB domain Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZRS8_DESOH
SpoIID/LytB domain-containing protein
Tax=CG_Delta_05
PLM4_90_b1_sep16_scaffold_672_14
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13981..14208)
DNA (228bp) protein (76aa)
GDP-L-fucose synthase Tax=Thermoanaerobacterium thermosaccharolyticum M0795 RepID=L0IJX1_THETR
nucleoside-diphosphate-sugar epimerase
Tax=BJP_IG2102_Syntrophobacterales_60_12
Displaying 15 items

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