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PLM0_60_b1_sep16_scaffold_3257

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM0_60_b1_sep16_scaffold_3257_1
unknown

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2..856
DNA (855bp) protein (285aa)

This feature has no annotations

PLM0_60_b1_sep16_scaffold_3257_2
unknown

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853..1341
DNA (489bp) protein (163aa)

This feature has no annotations

PLM0_60_b1_sep16_scaffold_3257_3
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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1553..2593
DNA (1041bp) protein (347aa)
Putative type IV pilus assembly protein PilM Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABF4_GEMAT
pilM; putative type IV pilus assembly protein PilM
Putative type IV pilus assembly protein PilM {ECO:0000313|EMBL:BAH39560.1}; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
PLM0_60_b1_sep16_scaffold_3257_4
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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2936..3241
DNA (306bp) protein (102aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABF3_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH39559.1}; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
PLM0_60_b1_sep16_scaffold_3257_5
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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3243..3860
DNA (618bp) protein (206aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABF2_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH39558.1}; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
PLM0_60_b1_sep16_scaffold_3257_6
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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3857..4381
DNA (525bp) protein (175aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABF1_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH39557.1}; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
PLM0_60_b1_sep16_scaffold_3257_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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4378..6441
DNA (2064bp) protein (688aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABF0_GEMAT
type II and III secretion system protein
Type II and III secretion system protein {ECO:0000313|EMBL:AHG91513.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_3257_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

6453..8945
DNA (2493bp) protein (831aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABE9_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG91512.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_3257_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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8897..10021
DNA (1125bp) protein (375aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Chorismate synthase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABE8_GEMAT
Chorismate synthase
PLM0_60_b1_sep16_scaffold_3257_10
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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10152..10538
DNA (387bp) protein (129aa)
aroK; shikimate kinase (EC:2.7.1.71)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
Shikimate kinase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABE7_GEMAT
PLM0_60_b1_sep16_scaffold_3257_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

10594..10815
DNA (222bp) protein (74aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABE6_GEMAT
protein of unknown function DUF494
Uncharacterized protein {ECO:0000313|EMBL:AHG91509.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_3257_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

10818..13223
DNA (2406bp) protein (802aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
DNA topoisomerase 1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABE5_GEMAT
DNA topoisomerase I
PLM0_60_b1_sep16_scaffold_3257_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

13172..14575
DNA (1404bp) protein (468aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037};; Folate-dependent tRNA (uracil-5-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; Folate-dependent tRNA(M-5-U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABE4_GEMAT
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
PLM0_60_b1_sep16_scaffold_3257_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

14612..15331
DNA (720bp) protein (240aa)
Tyrosine recombinase XerC Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABE3_GEMAT
Tyrosine recombinase xerC
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_3257_15
CG_Elusi_01, Elusimicrobia, Elusimicrobia, Bacteria

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comp(15375..16250)
DNA (876bp) protein (292aa)
Tax=CG_Elusi_01
PLM0_60_b1_sep16_scaffold_3257_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

16293..17072
DNA (780bp) protein (260aa)
Thiosulfate reductase cytochrome B subunit Tax=Myxococcus xanthus RepID=UPI0002E882EE
Di-heme cytochrome, transmembrane
Di-heme cytochrome, transmembrane {ECO:0000313|EMBL:AHG87864.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_3257_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

17069..17815
DNA (747bp) protein (249aa)
Oxidoreductase molybdopterin binding Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HGG3_ANADF
oxidoreductase molybdopterin binding protein
Oxidoreductase molybdopterin binding protein {ECO:0000313|EMBL:AHG87865.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_3257_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(17852..18238)
DNA (387bp) protein (129aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG91502.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_3257_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

18250..18867
DNA (618bp) protein (206aa)
ATP-dependent protease subunit HslV {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019556}; EC=3.4.25.2 {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019493};; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
ATP-dependent protease subunit HslV Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=HSLV_GEMAT
ATP-dependent protease hslV
PLM0_60_b1_sep16_scaffold_3257_20
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

18867..20318
DNA (1452bp) protein (484aa)
ATP-dependent protease ATPase subunit HslU Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABD9_GEMAT
ATP-dependent hsl protease ATP-binding subunit hslU
ATP-dependent protease ATPase subunit HslU {ECO:0000256|HAMAP-Rule:MF_00249, ECO:0000256|SAAS:SAAS00089650}; Unfoldase HslU {ECO:0000256|HAMAP-Rule:MF_00249}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_3257_21
RBG_16_Actinobacteria_67_15_curated, Acidimicrobiia, Actinobacteria, Bacteria

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20342..20818
DNA (477bp) protein (159aa)
2'-5' RNA ligase Tax=Desulfovibrio africanus PCS RepID=M5PR25_DESAF
2'-5' RNA ligase
Tax=RBG_16_Actinobacteria_67_15_curated
PLM0_60_b1_sep16_scaffold_3257_22
Ralstonia sp. GA3-3, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(20831..21202)
DNA (372bp) protein (124aa)
Uncharacterized protein Tax=Burkholderiaceae RepID=Q0K5R8_CUPNH
h16_A3595; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EON21900.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. GA3-3.;"
PLM0_60_b1_sep16_scaffold_3257_23
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(21199..23454)
DNA (2256bp) protein (752aa)
Serine/threonine protein kinase Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LFQ2_9BACT
protein kinase
Protein kinase {ECO:0000313|EMBL:AHG92755.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_3257_24
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(23526..23675)
DNA (150bp) protein (50aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TN98_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG93544.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM0_60_b1_sep16_scaffold_3257_25
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(23708..23908)
DNA (201bp) protein (67aa)
Uncharacterized protein {ECO:0000313|EMBL:KGI78836.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
PLM0_60_b1_sep16_scaffold_3257_26
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(23945..24832)
DNA (888bp) protein (296aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Janthinobacterium lividum genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
glucose dehydrogenase
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 26 items

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