ggKbase home page

PLM3_60_b1_sep16_scaffold_3687

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_3687_1
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(2..580)
DNA (579bp) protein (193aa)
putative lytic murein transglycosylase (EC:3.2.1.-)
Putative Lytic murein transglycosylase {ECO:0000313|EMBL:CBK43416.1}; EC=3.2.1.- {ECO:0000313|EMBL:CBK43416.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Putative Lytic murein transglycosylase Tax=Candidatus Nitrospira defluvii RepID=D8P7S0_9BACT
PLM3_60_b1_sep16_scaffold_3687_2
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(780..1433)
DNA (654bp) protein (218aa)
putative aminodeoxychorismate lyase (EC:4.1.3.38)
Putative Aminodeoxychorismate lyase {ECO:0000313|EMBL:CBK43415.1}; EC=4.1.3.38 {ECO:0000313|EMBL:CBK43415.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Putative Aminodeoxychorismate lyase Tax=Candidatus Nitrospira defluvii RepID=D8P7R9_9BACT
PLM3_60_b1_sep16_scaffold_3687_3
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(1436..2728)
DNA (1293bp) protein (431aa)
pabB; aminodeoxychorismate synthase component I (EC:2.6.1.85)
Aminodeoxychorismate synthase, component I Tax=Candidatus Nitrospira defluvii RepID=D8P7R8_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_3687_4
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

2941..3234
DNA (294bp) protein (98aa)
putative ATP synthase F0 subunit I (EC:3.6.3.14)
Putative ATP synthase F0, subunit I Tax=Candidatus Nitrospira defluvii RepID=D8P7R7_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_3687_5
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

3382..4128
DNA (747bp) protein (249aa)
atpB; ATP synthase F0 subunit A (EC:3.6.3.14)
ATP synthase subunit a Tax=Candidatus Nitrospira defluvii RepID=D8P7R6_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_3687_6
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

4296..4532
DNA (237bp) protein (79aa)
atpE; ATP synthase F0 subunit C (EC:3.6.3.14)
ATP synthase F0, subunit C Tax=Candidatus Nitrospira defluvii RepID=D8P7R5_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_3687_7
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

4623..5132
DNA (510bp) protein (170aa)
atpF; ATP synthase F0 subunit B (EC:3.6.3.14)
ATP synthase subunit b Tax=Candidatus Nitrospira defluvii RepID=D8P7R4_9BACT
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398, ECO:0000256|RuleBase:RU003849}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_3687_8
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(5419..5772)
DNA (354bp) protein (118aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8P7R3_9BACT
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_3687_9
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(5804..7192)
DNA (1389bp) protein (463aa)
putative M16 family Zn-dependent peptidase (EC:3.4.24.-)
Putative Zn-dependent peptidase, M16 family Tax=Candidatus Nitrospira defluvii RepID=D8P7R2_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_3687_10
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(7192..8586)
DNA (1395bp) protein (465aa)
putative M16 family Zn-dependent peptidase (EC:3.4.24.-)
Putative Zn-dependent peptidase, M16 family Tax=Candidatus Nitrospira defluvii RepID=D8P7R1_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_3687_11
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(8588..9649)
DNA (1062bp) protein (354aa)
rlmN; ribosomal RNA large subunit methyltransferase N (EC:2.1.1.-)
Probable dual-specificity RNA methyltransferase RlmN Tax=Candidatus Nitrospira defluvii RepID=D8P7R0_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_3687_12
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

9791..12055
DNA (2265bp) protein (755aa)
Putative Soluble lytic murein transglycosylase Tax=Candidatus Nitrospira defluvii RepID=D8P7Q9_9BACT
putative soluble lytic murein transglycosylase
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_3687_13
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

12108..12362
DNA (255bp) protein (85aa)
Putative Cell division protein ZapB Tax=Candidatus Nitrospira defluvii RepID=D8P7Q8_9BACT
putative cell division protein ZapB
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_3687_14
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

12355..12651
DNA (297bp) protein (99aa)
Putative Cell division protein ZapA Tax=Candidatus Nitrospira defluvii RepID=D8P7Q7_9BACT
putative cell division protein ZapA
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_3687_15
unknown

Not on your lists

comp(12697..13002)
DNA (306bp) protein (102aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_3687_16
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

13231..14808
DNA (1578bp) protein (526aa)
2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC:3.1.4.16)
Ribonuclease Y Tax=Candidatus Nitrospira defluvii RepID=D8P7Q5_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_3687_17
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

14919..15089
DNA (171bp) protein (57aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8P7Q4_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK43400.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_3687_18
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

15074..15682
DNA (609bp) protein (203aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8P7Q4_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_3687_19
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

15738..16502
DNA (765bp) protein (255aa)
xseA; exodeoxyribonuclease VII large subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 large subunit Tax=Candidatus Nitrospira defluvii RepID=D8P7Q3_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
Displaying 19 items

View Taxonomy