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PLM3_60_b1_sep16_scaffold_29

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Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_29_1
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

183..2096
DNA (1914bp) protein (638aa)
Putative periplasmic sensor signal transduction histidine kinase bin=GWC2_Deltaproteobacteria_56_8 species=Leptospirillum ferrooxidans genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
Signal transduction histidine kinase
Tax=RBG_16_Deltaproteobacteria_48_10_curated
PLM3_60_b1_sep16_scaffold_29_2
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

2093..2593
DNA (501bp) protein (167aa)
pilR; regulator protein pilR; K02667 two-component system, NtrC family, response regulator PilR bin=bin7_NC10_sister species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
sigma-54 dependent DNA-binding response regulator
Tax=RBG_16_Actinobacteria_67_10_curated
PLM3_60_b1_sep16_scaffold_29_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

2586..3326
DNA (741bp) protein (247aa)
Sigma-54 dependent DNA-binding response regulator bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
transcriptional regulatory protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_60_b1_sep16_scaffold_29_4
unknown

Not on your lists

3777..4091
DNA (315bp) protein (105aa)
hypothetical protein
PLM3_60_b1_sep16_scaffold_29_5
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

4133..5314
DNA (1182bp) protein (394aa)
serine protease Do bin=bin7_NC10_sister species=Dictyoglomus thermophilum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=bin7_NC10_sister organism_group=NC10
peptidase S1 and S6, chymotrypsin/Hap
Tax=CSP1_6_Rokubacteria
PLM3_60_b1_sep16_scaffold_29_6
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

5386..5772
DNA (387bp) protein (129aa)
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_29_7
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

6069..6551
DNA (483bp) protein (161aa)
Tax=RBG_16_NC10_65_8_curated
PLM3_60_b1_sep16_scaffold_29_8
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(6651..7904)
DNA (1254bp) protein (418aa)
Peptidoglycan-binding lipoprotein, OmpA family bin=GWA2_Elusimicrobia_69_24 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
putative OmpA/MotB family outer membrane protein
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_29_9
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(7901..9109)
DNA (1209bp) protein (403aa)
group 1 glycosyl transferase; K13057 trehalose synthase [EC:2.4.1.245] bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Latescibacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
group 1 glycosyl transferase
Tax=CSP1_6_Rokubacteria
PLM3_60_b1_sep16_scaffold_29_10
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(9133..9804)
DNA (672bp) protein (224aa)
Trehalose synthase/probable maltokinase bin=GWC2_Methylomirabilis_70_24 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_29_11
unknown

Not on your lists

comp(9831..10064)
DNA (234bp) protein (78aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_29_12
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(10082..10789)
DNA (708bp) protein (236aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8P8P1_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK43873.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_29_13
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(10804..12078)
DNA (1275bp) protein (425aa)
putative glycosyl transferase, family 2 (EC:2.4.-.-)
Putative Glycosyl transferase, family 2 {ECO:0000313|EMBL:CBK43874.1}; EC=2.4.-.- {ECO:0000313|EMBL:CBK43874.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Putative Glycosyl transferase, family 2 Tax=Candidatus Nitrospira defluvii RepID=D8P8P2_9BACT
PLM3_60_b1_sep16_scaffold_29_14
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12075..12563)
DNA (489bp) protein (163aa)
Glycoside hydrolase 15-related Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AWK2_RUBXD
glycoside hydrolase 15-like protein
Glycoside hydrolase 15-related {ECO:0000313|EMBL:ABG04226.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3_60_b1_sep16_scaffold_29_15
unknown

Not on your lists

comp(12700..12864)
DNA (165bp) protein (55aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_29_16
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(12861..14801)
DNA (1941bp) protein (647aa)
1,4-alpha-glucan-branching protein; K00700 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] bin=bin3_NC10 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin3_NC10 organism_group=NC10
glgB; 1,4-alpha-glucan branching protein (EC:2.4.1.18)
Tax=CSP1_5_NC10
PLM3_60_b1_sep16_scaffold_29_17
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(14874..16526)
DNA (1653bp) protein (551aa)
trehalose synthase; K05343 maltose alpha-D-glucosyltransferase [EC:5.4.99.16] bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
trehalose synthase
Tax=CSP1_5_NC10
PLM3_60_b1_sep16_scaffold_29_18
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(16562..18592)
DNA (2031bp) protein (677aa)
alpha amylase catalytic subunit bin=bin3_NC10 species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
alpha amylase catalytic subunit
Tax=CSP1_5_NC10
PLM3_60_b1_sep16_scaffold_29_19
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(18685..19386)
DNA (702bp) protein (234aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFR7_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68598.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3_60_b1_sep16_scaffold_29_20
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(19383..20663)
DNA (1281bp) protein (427aa)
Glycosyl transferase, family 2 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFR8_9BACT
glycosyl transferase
Glycosyl transferase, family 2 {ECO:0000313|EMBL:CBE68599.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3_60_b1_sep16_scaffold_29_21
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(20729..21931)
DNA (1203bp) protein (401aa)
group 1 glycosyl transferase; K13057 trehalose synthase [EC:2.4.1.245] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Latescibacteria tax=bin7_NC10_sister organism_group=NC10
group 1 glycosyl transferase
Tax=CSP1_6_Rokubacteria
PLM3_60_b1_sep16_scaffold_29_22
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(21964..23643)
DNA (1680bp) protein (560aa)
Trehalose synthase bin=GWC2_Methylomirabilis_70_24 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
trehalose synthase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_60_b1_sep16_scaffold_29_23
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(23663..24370)
DNA (708bp) protein (236aa)
Trehalose synthase/probable maltokinase bin=GWF2_Methylomirabilis_70_14 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_60_b1_sep16_scaffold_29_24
unknown

Not on your lists

comp(24514..24651)
DNA (138bp) protein (46aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_29_25
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(24648..27569)
DNA (2922bp) protein (974aa)
Malto-oligosyltrehalose synthase Tax=planctomycete KSU-1 RepID=I3IMF8_9PLAN
maltooligosyl trehalose synthase
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_29_26
unknown

Not on your lists

27644..27955
DNA (312bp) protein (104aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_29_27
unknown

Not on your lists

comp(27826..28065)
DNA (240bp) protein (80aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_29_28
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28595..30475)
DNA (1881bp) protein (627aa)
malto-oligosyltrehalose trehalohydrolase (EC:3.2.1.141)
Malto-oligosyltrehalose trehalohydrolase Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CIF3_DESK7
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM3_60_b1_sep16_scaffold_29_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

30636..32783
DNA (2148bp) protein (716aa)
Glycogen debranching enzyme bin=GWA2_Methylomirabilis_73_35 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycogen debranching protein GlgX
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_b1_sep16_scaffold_29_30
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(32854..34098)
DNA (1245bp) protein (415aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PDU2_9BACT
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
Displaying items 1-30 of 44 in total

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