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PLM3_60_b1_sep16_scaffold_989

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_989_1
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(2..208)
DNA (207bp) protein (69aa)
Squalene/phytoene synthase family protein Tax=Nitrosospira sp. APG3 RepID=M5DIR7_9PROT
squalene/phytoene synthase
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_989_2
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(208..489)
DNA (282bp) protein (94aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PCN4_9BACT
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_989_3
unknown

Not on your lists

620..772
DNA (153bp) protein (51aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_989_4
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

865..1749
DNA (885bp) protein (295aa)
htpX; putative protease HtpX (EC:3.4.24.-)
Probable Protease HtpX {ECO:0000313|EMBL:CBK40992.1}; EC=3.4.24.- {ECO:0000313|EMBL:CBK40992.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Probable Protease HtpX Tax=Candidatus Nitrospira defluvii RepID=D8PCN3_9BACT
PLM3_60_b1_sep16_scaffold_989_5
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

1765..2412
DNA (648bp) protein (216aa)
btuE; putative glutathione peroxidase (EC:1.11.1.9)
Glutathione peroxidase Tax=Candidatus Nitrospira defluvii RepID=D8PCN2_9BACT
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_989_6
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(2418..2690)
DNA (273bp) protein (91aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PCN1_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_989_7
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(2760..3422)
DNA (663bp) protein (221aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PCN0_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_989_8
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

3497..5038
DNA (1542bp) protein (514aa)
Putative Transporter of MFS family, contains Lipocalin domain Tax=Candidatus Nitrospira defluvii RepID=D8PCM9_9BACT
putative transporter
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_989_9
unknown

Not on your lists

comp(5045..5326)
DNA (282bp) protein (94aa)
hypothetical protein
PLM3_60_b1_sep16_scaffold_989_10

Not on your lists

comp(5323..5970)
DNA (648bp) protein (216aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL14626.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3_60_b1_sep16_scaffold_989_11
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

6192..6650
DNA (459bp) protein (153aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PCM7_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_989_12
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

6813..7496
DNA (684bp) protein (228aa)
Response regulator Tax=Candidatus Nitrospira defluvii RepID=D8PCM6_9BACT
response regulator
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_989_13
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

7543..8556
DNA (1014bp) protein (338aa)
response regulator (EC:2.7.7.65)
Response regulator, contains GGDEF domain {ECO:0000313|EMBL:CBK40984.1}; EC=2.7.7.65 {ECO:0000313|EMBL:CBK40984.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Response regulator, contains GGDEF domain Tax=Candidatus Nitrospira defluvii RepID=D8PCM5_9BACT
PLM3_60_b1_sep16_scaffold_989_14
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

8549..10777
DNA (2229bp) protein (743aa)
putative hybrid histidine kinase (EC:2.7.13.3)
Putative Hybrid histidine kinase {ECO:0000313|EMBL:CBK40807.1}; EC=2.7.13.3 {ECO:0000313|EMBL:CBK40807.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Putative Hybrid histidine kinase Tax=Candidatus Nitrospira defluvii RepID=D8PC48_9BACT
PLM3_60_b1_sep16_scaffold_989_15
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10782..11111
DNA (330bp) protein (110aa)
cytoplasmic protein
Hypothetical cytosolic protein bin=GWB2_Nitrospirae_rel_47_37 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM3_60_b1_sep16_scaffold_989_trna_1
unknown

Not on your lists

comp(11347..11419)
DNA (73bp)
transferRNA Ala
PLM3_60_b1_sep16_scaffold_989_16
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(11586..11849)
DNA (264bp) protein (88aa)
Uncharacterized protein bin=GWC2_Nitrospirae_57_13 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_989_17
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(11854..12549)
DNA (696bp) protein (232aa)
purN; phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylglycinamide formyltransferase Tax=Candidatus Nitrospira defluvii RepID=D8PCM2_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_989_18
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(12539..13576)
DNA (1038bp) protein (346aa)
purM; phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase Tax=Candidatus Nitrospira defluvii RepID=D8PCM1_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_989_19
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(13870..15255)
DNA (1386bp) protein (462aa)
Sigma-54 dependent DNA-binding response regulator Tax=Candidatus Nitrospira defluvii RepID=D8PCM0_9BACT
sigma-54 dependent DNA-binding response regulator
Sigma-54 dependent DNA-binding response regulator {ECO:0000313|EMBL:CBK40979.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_989_20
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(15366..17735)
DNA (2370bp) protein (790aa)
sensor histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:CBK40978.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Sensor histidine kinase Tax=Candidatus Nitrospira defluvii RepID=D8PCL9_9BACT
PLM3_60_b1_sep16_scaffold_989_21
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(17735..18049)
DNA (315bp) protein (105aa)
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_989_22
unknown

Not on your lists

18312..18557
DNA (246bp) protein (82aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_989_23
unknown

Not on your lists

18561..18842
DNA (282bp) protein (94aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_989_24
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(19106..19531)
DNA (426bp) protein (142aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PCL8_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_989_25
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

19685..20569
DNA (885bp) protein (295aa)
Nucleoside triphosphate pyrophosphohydrolase Tax=Candidatus Nitrospira defluvii RepID=D8PCL7_9BACT
mazG; nucleoside triphosphate pyrophosphohydrolase
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_989_26
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

20612..21256
DNA (645bp) protein (215aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PCL6_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_989_27
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(21564..21971)
DNA (408bp) protein (136aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PCL5_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_989_28
Selenomonas sp. F0473, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(22026..22649)
DNA (624bp) protein (208aa)
Uncharacterized protein Tax=Selenomonas sp. F0473 RepID=K9CI25_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKU70481.1}; species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas sp. F0473.;"
rhodanese-like protein
PLM3_60_b1_sep16_scaffold_989_29
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(22744..23850)
DNA (1107bp) protein (369aa)
hemY; protoporphyrinogen oxidase (EC:1.3.3.4)
Protoporphyrinogen oxidase Tax=Candidatus Nitrospira defluvii RepID=D8PCL4_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
Displaying items 1-30 of 32 in total

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