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PLM3_60_b1_sep16_scaffold_4874

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_4874_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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3..650
DNA (648bp) protein (216aa)
guaB; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase Tax=Candidatus Nitrospira defluvii RepID=B3U4L0_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_4874_2
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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763..2319
DNA (1557bp) protein (519aa)
guaA; GMP synthase (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
GMP synthase [glutamine-hydrolyzing] Tax=Candidatus Nitrospira defluvii RepID=B3U4L1_9BACT
PLM3_60_b1_sep16_scaffold_4874_3
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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2462..3346
DNA (885bp) protein (295aa)
rluB; 23S rRNA pseudouridylate synthase B (EC:4.2.1.70)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Pseudouridine synthase Tax=Candidatus Nitrospira defluvii RepID=B3U4L2_9BACT
PLM3_60_b1_sep16_scaffold_4874_4
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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3343..3993
DNA (651bp) protein (217aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:ACE75581.1}; EC=6.1.1.12 {ECO:0000313|EMBL:ACE75581.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Aspartate--tRNA ligase Tax=Candidatus Nitrospira defluvii RepID=B3U4L4_9BACT
PLM3_60_b1_sep16_scaffold_4874_5
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

3990..4583
DNA (594bp) protein (198aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:ACE75581.1}; EC=6.1.1.12 {ECO:0000313|EMBL:ACE75581.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Aspartate--tRNA ligase Tax=Candidatus Nitrospira defluvii RepID=B3U4L4_9BACT
Suspect SCG annotation. See neighboring gene [PLM3_60_b1_sep16_scaffold_4874_4].
PLM3_60_b1_sep16_scaffold_4874_6
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

4580..4912
DNA (333bp) protein (111aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartate--tRNA ligase Tax=Candidatus Nitrospira defluvii RepID=B3U4L4_9BACT
Suspect SCG annotation. See neighboring gene [PLM3_60_b1_sep16_scaffold_4874_5].
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_4874_7
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

5065..5436
DNA (372bp) protein (124aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PGJ7_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK42384.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_4874_8
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

5454..5837
DNA (384bp) protein (128aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PGJ7_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK42384.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_4874_9
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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6043..9063
DNA (3021bp) protein (1007aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PEE1_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK41600.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_4874_10
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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9500..9715
DNA (216bp) protein (72aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_60_b1_sep16_scaffold_4874_11
unknown

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comp(9642..9893)
DNA (252bp) protein (84aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_4874_12
unknown

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10227..10544
DNA (318bp) protein (106aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_4874_13
Bdellovibrio bacteriovorus, Bdellovibrio, Bdellovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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10690..11868
DNA (1179bp) protein (393aa)
Putative uncharacterized protein Tax=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) RepID=Q6MKU3_BDEBA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAE80114.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Bdellovibrionales; Bdellovibrionaceae; Bdellovibrio.;" source="Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529; / HD100).;"
PLM3_60_b1_sep16_scaffold_4874_14
Paenibacillus darwinianus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11931..12296
DNA (366bp) protein (122aa)
hypothetical protein Tax=Brevibacillus sp. phR RepID=UPI000369A7E6
Uncharacterized protein {ECO:0000313|EMBL:EXX85073.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus darwinianus.;"
hypothetical protein
PLM3_60_b1_sep16_scaffold_4874_15
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

12465..12788
DNA (324bp) protein (108aa)
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_4874_16
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

13016..13384
DNA (369bp) protein (123aa)
Conserved exported protein Tax=Candidatus Nitrospira defluvii RepID=B3U4M4_9BACT
hypothetical protein
Conserved exported protein {ECO:0000313|EMBL:ACE75591.1}; Uncharacterized protein {ECO:0000313|EMBL:CBK41184.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_4874_17
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

13480..14028
DNA (549bp) protein (183aa)
rluE; 23S rRNA pseudouridylate synthase E (EC:4.2.1.70 5.4.99.-)
Pseudouridine synthase Tax=Candidatus Nitrospira defluvii RepID=B3U4M3_9BACT
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_4874_18
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(14263..15279)
DNA (1017bp) protein (339aa)
Conserved exported protein Tax=Candidatus Nitrospira defluvii RepID=B3U4N0_9BACT
putative oxidoreductase
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_4874_19
unknown

Not on your lists

15746..15874
DNA (129bp) protein (43aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_4874_20
unknown

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15959..16081
DNA (123bp) protein (41aa)

This feature has no annotations

Displaying 20 items

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