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PLM3_60_b1_sep16_scaffold_6916

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_6916_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(1..99)
DNA (99bp) protein (33aa)
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_6916_2
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(92..1105)
DNA (1014bp) protein (338aa)
rfaEa; d-beta-d-heptose 7-phosphate kinase (EC:2.7.1.-)
D-beta-D-heptose 7-phosphate kinase, domain I of bifunctional protein HldE Tax=Candidatus Nitrospira defluvii RepID=D8PG75_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_6916_3
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(1138..1920)
DNA (783bp) protein (261aa)
lepB; signal peptidase I (EC:3.4.21.89)
Signal peptidase I Tax=Candidatus Nitrospira defluvii RepID=D8PG74_9BACT
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_6916_4
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(1923..3734)
DNA (1812bp) protein (604aa)
Elongation factor 4 Tax=Candidatus Nitrospira defluvii RepID=D8PG73_9BACT
lepA; GTP-binding protein LepA
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_6916_5
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

3969..5222
DNA (1254bp) protein (418aa)
bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase (EC:2.6.1.62)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase Tax=Candidatus Nitrospira defluvii RepID=D8PG72_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_6916_6
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

5656..6051
DNA (396bp) protein (132aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PH63_9BACT
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_6916_7
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(6497..7303)
DNA (807bp) protein (269aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PG69_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_6916_8
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(7359..7835)
DNA (477bp) protein (159aa)
Transcription elongation factor GreA Tax=Candidatus Nitrospira defluvii RepID=D8PG68_9BACT
greA; transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_6916_9
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(7853..11074)
DNA (3222bp) protein (1074aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116, ECO:0000313|EMBL:CBK42254.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
carB; carbamoyl-phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain Tax=Candidatus Nitrospira defluvii RepID=D8PG67_9BACT
PLM3_60_b1_sep16_scaffold_6916_10
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(11143..11592)
DNA (450bp) protein (150aa)
Putative Peptidase M48, Ste24p Tax=Candidatus Nitrospira defluvii RepID=D8PG66_9BACT
putative peptidase M48, Ste24p
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_6916_11
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(11640..12014)
DNA (375bp) protein (125aa)
Putative Peptidase M48, Ste24p Tax=Candidatus Nitrospira defluvii RepID=D8PG66_9BACT
putative peptidase M48, Ste24p
Putative Peptidase M48, Ste24p {ECO:0000313|EMBL:CBK42253.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_6916_12
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(12086..13051)
DNA (966bp) protein (322aa)
putative signal peptide peptidase SppA (EC:3.4.21.-)
Putative Signal peptide peptidase SppA Tax=Candidatus Nitrospira defluvii RepID=D8PG65_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_6916_13
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(13044..14237)
DNA (1194bp) protein (398aa)
carA; carbamoyl-phosphate synthase small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain Tax=Candidatus Nitrospira defluvii RepID=D8PG64_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_6916_14
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(14255..14791)
DNA (537bp) protein (179aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PG63_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_6916_15
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(14795..16000)
DNA (1206bp) protein (402aa)
pyrC; dihydroorotase (EC:3.5.2.3)
Dihydroorotase Tax=Candidatus Nitrospira defluvii RepID=D8PG62_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_6916_16
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(15997..16920)
DNA (924bp) protein (308aa)
pyrB; aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001, ECO:0000313|EMBL:CBK42248.1}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001, ECO:0000313|EMBL:CBK42248.1};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Aspartate carbamoyltransferase Tax=Candidatus Nitrospira defluvii RepID=D8PG61_9BACT
PLM3_60_b1_sep16_scaffold_6916_17
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(16935..17495)
DNA (561bp) protein (187aa)
pyrR; bifunctional protein PyrR (EC:2.4.2.9)
Bifunctional protein PyrR Tax=Candidatus Nitrospira defluvii RepID=D8PG60_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_6916_18
unknown

Not on your lists

comp(17524..17817)
DNA (294bp) protein (98aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_6916_19
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(17938..18582)
DNA (645bp) protein (215aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PGY6_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_6916_20
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(18536..19594)
DNA (1059bp) protein (353aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PGY6_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_6916_21
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(19595..20893)
DNA (1299bp) protein (433aa)
proA; gamma-glutamylphosphate reductase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase Tax=Candidatus Nitrospira defluvii RepID=D8PGY7_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_6916_22
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

21612..21926
DNA (315bp) protein (105aa)
hypothetical protein bin=RBG_16_Aminicenantes_63_16_plus species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_60_b1_sep16_scaffold_6916_23
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(21961..22500)
DNA (540bp) protein (180aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PGY8_9BACT
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_6916_24
unknown

Not on your lists

comp(22596..23252)
DNA (657bp) protein (219aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_6916_25
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(23266..23847)
DNA (582bp) protein (194aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PGY9_9BACT
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_6916_26
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(23858..24427)
DNA (570bp) protein (190aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PGZ0_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK42527.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_6916_27
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(24424..24960)
DNA (537bp) protein (179aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PGZ1_9BACT
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
Displaying 27 items

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