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PLM3_60_b1_sep16_scaffold_1380

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_1380_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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3..431
DNA (429bp) protein (143aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PIK3_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_1380_2
uncultured Desulfobacterium sp., Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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608..1072
DNA (465bp) protein (155aa)
Putative uncharacterized protein Tax=uncultured Desulfobacterium sp. RepID=E1Y9J0_9DELT
Putative uncharacterized protein {ECO:0000313|EMBL:CBX27234.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium; environmental samples.;" source="uncultured Desulfobacterium sp.;"
ECF subfamily RNA polymerase sigma-24 factor
PLM3_60_b1_sep16_scaffold_1380_3
unknown

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1056..1373
DNA (318bp) protein (106aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_1380_4
uncultured Desulfobacterium sp., Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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1400..1807
DNA (408bp) protein (136aa)
Putative uncharacterized protein Tax=uncultured Desulfobacterium sp. RepID=E1Y9J2_9DELT
Putative uncharacterized protein {ECO:0000313|EMBL:CBX27236.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium; environmental samples.;" source="uncultured Desulfobacterium sp.;"
hypothetical protein
PLM3_60_b1_sep16_scaffold_1380_5
CSP1_5_NC10, NC10, Bacteria

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comp(1897..3246)
DNA (1350bp) protein (450aa)
ribonuclease BN; K07058 membrane protein bin=bin3_NC10 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
ribonuclease BN
Tax=CSP1_5_NC10
PLM3_60_b1_sep16_scaffold_1380_6
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3358..3921)
DNA (564bp) protein (188aa)
cytochrome biogenesis protein CcdA Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI0003818A19
cyochrome C, class i
Cytochrome c-type {ECO:0000313|EMBL:CAJ97003.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337); (Ralstonia eutropha).;"
PLM3_60_b1_sep16_scaffold_1380_7
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3908..5131)
DNA (1224bp) protein (408aa)
hypothetical protein Tax=Arhodomonas aquaeolei RepID=UPI000370AB45
sulfite oxidase and related enzymes
Sulfite oxidase and related enzymes {ECO:0000313|EMBL:BAF89165.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
PLM3_60_b1_sep16_scaffold_1380_8
unknown

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comp(5408..5773)
DNA (366bp) protein (122aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_1380_9
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

5961..8276
DNA (2316bp) protein (772aa)
putative penicillin-binding protein 1B (EC:2.4.1.129 3.4.-.-)
Putative Penicillin-binding protein 1B {ECO:0000313|EMBL:CBK43274.1}; EC=2.4.1.129 {ECO:0000313|EMBL:CBK43274.1};; EC=3.4.-.- {ECO:0000313|EMBL:CBK43274.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Putative Penicillin-binding protein 1B Tax=Candidatus Nitrospira defluvii RepID=D8PJ37_9BACT
PLM3_60_b1_sep16_scaffold_1380_10
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

8542..9324
DNA (783bp) protein (261aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PEF3_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK41612.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_1380_11
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9435..10001)
DNA (567bp) protein (189aa)
Putative uncharacterized protein Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CQQ4_SIDLE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE11290.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
PLM3_60_b1_sep16_scaffold_1380_12
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(10177..10713)
DNA (537bp) protein (179aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PAJ2_9BACT
hypothetical protein
Tax=RBG_16_NC10_65_8_curated
PLM3_60_b1_sep16_scaffold_1380_13
unknown

Not on your lists

comp(10717..10950)
DNA (234bp) protein (78aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_1380_14
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(11145..11486)
DNA (342bp) protein (114aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PA97_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK40156.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_1380_15
unknown

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11699..11869
DNA (171bp) protein (57aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_1380_16
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

12152..13621
DNA (1470bp) protein (490aa)
putative hybrid sensor histidine kinase (EC:2.7.13.3)
Putative Hybrid sensor histidine kinase Tax=Candidatus Nitrospira defluvii RepID=D8PJ17_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_1380_17
Pseudomonas amygdali, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13626..14342
DNA (717bp) protein (239aa)
TenA/THI-4 family protein Tax=Pseudomonas syringae pv. aesculi str. 0893_23 RepID=F3DF28_9PSED
TenA/THI-4 family protein {ECO:0000313|EMBL:EGH02922.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas amygdali.;" source="Pseudomonas amygdali pv. aesculi str. 0893_23.;"
TenA/THI-4 family protein
PLM3_60_b1_sep16_scaffold_1380_18
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

14660..15895
DNA (1236bp) protein (412aa)
diguanylate cyclase bin=bin3_NC10 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
Conserved protein of unknown function (membrane protein with a C-terminal Diguanylate cyclase domain)
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
Displaying 18 items

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