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PLM3_60_b1_sep16_scaffold_1627

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_1627_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

246..530
DNA (285bp) protein (95aa)
id=1759800 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_b1_sep16_scaffold_1627_2
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

607..852
DNA (246bp) protein (82aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PHZ5_9BACT
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_1627_3
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

966..1607
DNA (642bp) protein (214aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00035EDC27
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_1627_4
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

2025..2327
DNA (303bp) protein (101aa)
Putative RNA-binding protein RbpA Tax=Candidatus Nitrospira defluvii RepID=D8PIC8_9BACT
putative RNA-binding protein RbpA
Putative RNA-binding protein RbpA {ECO:0000313|EMBL:CBK43015.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_1627_5
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

2517..3050
DNA (534bp) protein (178aa)
putative FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915, ECO:0000313|EMBL:CBK42877.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Peptidyl-prolyl cis-trans isomerase Tax=Candidatus Nitrospira defluvii RepID=D8PHZ0_9BACT
PLM3_60_b1_sep16_scaffold_1627_6
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

3297..5210
DNA (1914bp) protein (638aa)
UvrABC system protein B bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
uvrB; excinuclease ABC subunit B
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_1627_7
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(5215..5475)
DNA (261bp) protein (87aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PHN5_9BACT
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_1627_8
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists


5676..7019
DNA (1344bp) protein (448aa)
Signal recognition particle protein Tax=Candidatus Nitrospira defluvii RepID=D8PHN3_9BACT
ffh; signal recognition particle protein
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306, ECO:0000313|EMBL:CBK42770.1}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_1627_9
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists


7117..7401
DNA (285bp) protein (95aa)
30S ribosomal protein S16 Tax=Candidatus Nitrospira defluvii RepID=D8PHN2_9BACT
rpsP; 30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385, ECO:0000313|EMBL:CBK42769.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_1627_10
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

7429..7635
DNA (207bp) protein (69aa)
Ribosome maturation factor RimM Tax=Candidatus Nitrospira defluvii RepID=D8PHN1_9BACT
rimM; ribosome maturation factor rimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_1627_11
RBG_13_Deltaproteobacteria_51_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7652..7861
DNA (210bp) protein (70aa)
Ribosome maturation factor RimM Tax=Candidatus Nitrospira defluvii RepID=D8PHN1_9BACT
rimM; ribosome maturation factor rimM
Tax=RBG_13_Deltaproteobacteria_51_10_curated
PLM3_60_b1_sep16_scaffold_1627_12
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

7848..8648
DNA (801bp) protein (267aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase Tax=Candidatus Nitrospira defluvii RepID=D8PHN0_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_1627_13
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


8645..9091
DNA (447bp) protein (149aa)
50S ribosomal protein L19 Tax=Candidatus Nitrospira defluvii RepID=D8PHM9_9BACT
rplS; 50S ribosomal protein L19
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_1627_14
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

9122..9772
DNA (651bp) protein (217aa)
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
Ribonuclease HII Tax=Candidatus Nitrospira defluvii RepID=D8PHM8_9BACT
PLM3_60_b1_sep16_scaffold_1627_15
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

9824..10210
DNA (387bp) protein (129aa)
UPF0102 protein NIDE3068 Tax=Candidatus Nitrospira defluvii RepID=D8PHM7_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_1627_16
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

10344..11012
DNA (669bp) protein (223aa)
ftsE; cell division protein FtsE (EC:3.6.3.-)
Cell division protein FtsE Tax=Candidatus Nitrospira defluvii RepID=D8PHM6_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_1627_17
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

11009..11908
DNA (900bp) protein (300aa)
Cell division protein FtsX Tax=Candidatus Nitrospira defluvii RepID=D8PHM5_9BACT
putative cell division protein FtsX
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_1627_18
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

11905..13107
DNA (1203bp) protein (401aa)
Putative Murein hydrolase EnvC Tax=Candidatus Nitrospira defluvii RepID=D8PHM4_9BACT
putative murein hydrolase EnvC
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_1627_19
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

13133..14461
DNA (1329bp) protein (443aa)
ctpA; C-terminal-processing protease (EC:3.4.21.102)
C-terminal-processing protease Tax=Candidatus Nitrospira defluvii RepID=D8PHM3_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_1627_20
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(14473..14976)
DNA (504bp) protein (168aa)
histidinol phosphatase Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2B0A7
putative DNA polymerase IV
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_1627_21
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

15175..15393
DNA (219bp) protein (73aa)
Thiamine biosynthesis protein ThiS Tax=Candidatus Nitrospira defluvii RepID=D8PHM0_9BACT
thiS; thiamine biosynthesis protein thiS
Thiamine biosynthesis protein ThiS {ECO:0000313|EMBL:CBK42757.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3_60_b1_sep16_scaffold_1627_22
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

15489..16262
DNA (774bp) protein (258aa)
thiazole synthase Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2B0A9
thiG; thiazole biosynthesis protein thiG
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_1627_23
unknown

Not on your lists

comp(16345..16563)
DNA (219bp) protein (73aa)

This feature has no annotations

Displaying 23 items

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