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PLM3_60_b1_sep16_scaffold_3385

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_3385_1
unknown

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2..154
DNA (153bp) protein (51aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_3385_2
Anabaena cylindrica, Anabaena, Nostocales, Cyanobacteria, Bacteria

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comp(83..598)
DNA (516bp) protein (172aa)
YD repeat protein Tax=Anabaena cylindrica (strain ATCC 27899 / PCC 7122) RepID=K9ZR89_ANACC
YD repeat protein
YD repeat protein {ECO:0000313|EMBL:AFZ61077.1}; species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Anabaena.;" source="Anabaena cylindrica (strain ATCC 27899 / PCC 7122).;"
PLM3_60_b1_sep16_scaffold_3385_3
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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comp(672..2564)
DNA (1893bp) protein (631aa)
PKD domain-containing protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
PKD domain-containing protein
Tax=RBG_16_Euryarchaeota_67_27_curated
PLM3_60_b1_sep16_scaffold_3385_4
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

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comp(2615..3253)
DNA (639bp) protein (213aa)
hypothetical protein bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
PLM3_60_b1_sep16_scaffold_3385_5
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

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comp(3269..5773)
DNA (2505bp) protein (835aa)
type II and III secretion system protein; K02666 type IV pilus assembly protein PilQ bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
type IV pilus secretin PilQ
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_3385_6
R_Acidobacteria_68_18, Acidobacteria, Bacteria

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comp(5773..6273)
DNA (501bp) protein (167aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3_60_b1_sep16_scaffold_3385_7
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

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comp(6270..6881)
DNA (612bp) protein (204aa)
fimbrial assembly protein PilO; K02664 type IV pilus assembly protein PilO bin=CNBR_ACIDO species=Geopsychrobacter electrodiphilus genus=Geopsychrobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
pilO; type IV pilus biogenesis protein PilO
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_3385_8
unknown

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comp(7058..7423)
DNA (366bp) protein (122aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_3385_9
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

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comp(7423..8433)
DNA (1011bp) protein (337aa)
Type IV pilus biogenesis ATPase PilM bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
pilus assembly protein PilM
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_3385_10
unknown

Not on your lists

comp(8420..8647)
DNA (228bp) protein (76aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_3385_11
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(8589..10244)
DNA (1656bp) protein (552aa)
cell wall hydrolase Tax=Thermodesulfatator atlanticus RepID=UPI0003B41CDF
cell wall hydrolase/autolysin
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_3385_12
R_WOR_2_68_15, WOR-2, Bacteria

Not on your lists

comp(10339..11244)
DNA (906bp) protein (302aa)
Tyrosine recombinase XerC Tax=uncultured Acidobacteria bacterium RepID=H5SPQ9_9BACT
tyrosine recombinase XerC
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_68_15_curated
PLM3_60_b1_sep16_scaffold_3385_13
GWC2_Geobacteraceae_48_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(11333..11704)
DNA (372bp) protein (124aa)
tRNA (uracil-5-)-methyltransferase Tax=Geobacillus caldoxylosilyticus RepID=UPI00031E1BE9
hypothetical protein
Tax=GWC2_Geobacteraceae_48_7_curated
Displaying 13 items

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