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PLM3_60_b1_sep16_scaffold_3728

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_3728_1
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

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2..172
DNA (171bp) protein (57aa)
Peptidoglycan-associated lipoprotein Tax=Geobacter sp. (strain M18) RepID=E8WR12_GEOS8
peptidoglycan-associated lipoprotein
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_3728_2
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

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185..1093
DNA (909bp) protein (303aa)
Tol-pal system protein YbgF Tax=Desulfococcus multivorans DSM 2059 RepID=S7V0I8_DESML
hypothetical protein
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_3728_3
Desulfocapsa sulfexigens, Desulfocapsa, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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1125..1550
DNA (426bp) protein (142aa)
Single-stranded DNA-binding protein Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1PSQ3_DESSD
single stranded DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfocapsa.;" source="Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1).;"
PLM3_60_b1_sep16_scaffold_3728_4
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(1642..3918)
DNA (2277bp) protein (759aa)
Putative membrane associated hydrolase bin=GWF2_Ignavibacteria_35_20 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
membrane associated hydrolase
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3_60_b1_sep16_scaffold_3728_5
unknown

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4173..4421
DNA (249bp) protein (83aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_3728_6
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4383..4868)
DNA (486bp) protein (162aa)
cyclophilin type peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LDJ4_CHLTF
Tax=RBG_13_Deltaproteobacteria_43_22_curated
PLM3_60_b1_sep16_scaffold_3728_7
GWA2_Ignavibacteria_54_16_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(4922..5977)
DNA (1056bp) protein (352aa)
Putative uncharacterized protein bin=GWA2_Ignavibacteriae_54_16_partial species=uncultured archaeon genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Ignavibacteriae_54_16_partial organism_group=Ignavibacteria
PBS lyase HEAT domain-containing protein
Tax=GWA2_Ignavibacteria_54_16_curated
PLM3_60_b1_sep16_scaffold_3728_8
RBG_19FT_COMBO_Aminicenantes_65_30_curated, Aminicenantes, Bacteria

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comp(6216..7775)
DNA (1560bp) protein (520aa)
hypothetical protein Tax=Aminicenantes RepID=UPI00038098CB
peptidase M56 BlaR1
Tax=RBG_19FT_COMBO_Aminicenantes_65_30_curated
PLM3_60_b1_sep16_scaffold_3728_9
RBG_19FT_COMBO_Aminicenantes_65_30_curated, Aminicenantes, Bacteria

Not on your lists

comp(7788..8558)
DNA (771bp) protein (257aa)
hypothetical protein bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Tax=RBG_19FT_COMBO_Aminicenantes_65_30_curated
PLM3_60_b1_sep16_scaffold_3728_10

Not on your lists

comp(8555..9148)
DNA (594bp) protein (198aa)
hypothetical protein Tax=Aminicenantes RepID=UPI000377E68A
Marine sediment metagenome DNA, contig: S06H3_S08300 {ECO:0000313|EMBL:GAI24442.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ECF subfamily RNA polymerase sigma-24 factor
PLM3_60_b1_sep16_scaffold_3728_11
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

9307..9951
DNA (645bp) protein (215aa)
id=12555892 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PhoH family protein
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_3728_12
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9948..10208
DNA (261bp) protein (87aa)
Putative ATP-binding protein in pho regulon Tax=Alteromonas sp. (strain SN2) RepID=F5ZD40_ALTSS
nucleoside triphosphate hydrolase
Tax=RBG_13_Deltaproteobacteria_43_22_curated
PLM3_60_b1_sep16_scaffold_3728_13
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

10205..12532
DNA (2328bp) protein (776aa)
Membrane-associated metal-dependent phosphohydrolase Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A576_PELCD
phosphohydrolase
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_3728_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

12474..12971
DNA (498bp) protein (166aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Endoribonuclease YbeY Tax=uncultured Acidobacteria bacterium RepID=H5SIW5_9BACT
hypothetical protein
PLM3_60_b1_sep16_scaffold_3728_15
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

12968..14170
DNA (1203bp) protein (401aa)
CBS domain-containing protein bin=CNBR_ACIDO species=Acidimicrobium ferrooxidans genus=Acidimicrobium taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
tlyC; hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3_60_b1_sep16_scaffold_3728_16
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14151..15041
DNA (891bp) protein (297aa)
GTPase Era Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MZ14_CORCM
era; GTP-binding protein Era
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
PLM3_60_b1_sep16_scaffold_3728_17
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

Not on your lists

15143..17431
DNA (2289bp) protein (763aa)
lipopolysaccharide transport periplasmic protein LptA
Tax=RBG_13_RIF03_48_7_curated
PLM3_60_b1_sep16_scaffold_3728_18
CG_CP01_01, CG_CP01, Bacteria

Not on your lists

17615..18688
DNA (1074bp) protein (358aa)
Integrase family protein Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B8X9_HERA2
integrase family protein
Tax=CG_CP01_01
Displaying 18 items

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