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PLM3_60_b1_sep16_scaffold_942

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_942_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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579..1916
DNA (1338bp) protein (446aa)
reverse transcriptase/maturase (EC:2.7.7.49)
hypothetical protein Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00037862EE
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_60_b1_sep16_scaffold_942_2
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

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comp(2015..2611)
DNA (597bp) protein (199aa)
Response regulator with a HTH DNA-binding domain bin=GWC2_CP_Nitrospirae-rel_42_7 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
response regulator
Tax=RBG_13_Nitrospirae_43_8_curated
PLM3_60_b1_sep16_scaffold_942_3
Nitrospina gracilis, Nitrospina, Nitrospinales, Nitrospinia, Nitrospinae, Bacteria

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comp(2624..5011)
DNA (2388bp) protein (796aa)
Uncharacterized protein Tax=Nitrospina gracilis 3/211 RepID=M1YZK8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCQ90941.1}; species="Bacteria; Nitrospinae; Nitrospinia; Nitrospinales; Nitrospinaceae; Nitrospina.;" source="Nitrospina gracilis (strain 3/211).;"
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase
PLM3_60_b1_sep16_scaffold_942_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(5292..6005)
DNA (714bp) protein (238aa)
hypothetical protein Tax=Massilia niastensis RepID=UPI000380663A
peptidase M23B
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_b1_sep16_scaffold_942_5
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5998..6723)
DNA (726bp) protein (242aa)
ErfK/YbiS/YcfS/YnhG family protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q026E3_SOLUE
Peptidoglycan-binding protein {ECO:0000313|EMBL:KGM54609.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
ErfK/YbiS/YcfS/YnhG family protein
PLM3_60_b1_sep16_scaffold_942_6
unknown

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comp(6855..7028)
DNA (174bp) protein (58aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_942_7
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7334..9136
DNA (1803bp) protein (601aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
Sensory histidine kinase Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUS6_9RHIZ
HAMP domain protein
PLM3_60_b1_sep16_scaffold_942_8
RBG_16_Deltaproteobacteria_58_17_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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9154..13263
DNA (4110bp) protein (1370aa)
GAF sensor hybrid histidine kinase (EC:2.7.13.3)
Hybrid signal transduction histidine kinase J bin=GWC2_Syntrophobacterales_56_13 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=RBG_16_Deltaproteobacteria_58_17_curated
PLM3_60_b1_sep16_scaffold_942_9
Fischerella sp. JSC-11, Fischerella, Stigonematales, Cyanobacteria, Bacteria

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13323..14156
DNA (834bp) protein (278aa)
MCP methyltransferase, CheR-type {ECO:0000313|EMBL:EHC08364.1}; EC=2.1.1.80 {ECO:0000313|EMBL:EHC08364.1};; species="Bacteria; Cyanobacteria; Stigonematales; Fischerella.;" source="Fischerella sp. JSC-11.;"
MCP methyltransferase, CheR-type Tax=Fischerella sp. JSC-11 RepID=G6G0F7_9CYAN
MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal
PLM3_60_b1_sep16_scaffold_942_10
Methanobacterium lacus, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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14156..15643
DNA (1488bp) protein (496aa)
Signal transduction histidine kinase Tax=Methanobacterium sp. (strain AL-21) RepID=F0T8N6_METSL
signal transduction histidine kinase
Signal transduction histidine kinase {ECO:0000313|EMBL:ADZ08578.1}; species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium lacus (strain AL-21).;"
PLM3_60_b1_sep16_scaffold_942_11
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

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16169..17062
DNA (894bp) protein (298aa)
hypothetical protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
rpoD; RNA polymerase primary sigma factor
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_942_12
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17078..17737
DNA (660bp) protein (220aa)
Putative uncharacterized protein Tax=Beggiatoa sp. PS RepID=A7BPJ6_9GAMM
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
PLM3_60_b1_sep16_scaffold_942_13
unknown

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17949..18557
DNA (609bp) protein (203aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_942_14
Smithella sp. D17, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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18594..18809
DNA (216bp) protein (72aa)
Uncharacterized protein Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LPP1_DESBD
Membrane protein {ECO:0000313|EMBL:KFZ44432.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. D17.;"
hypothetical protein
PLM3_60_b1_sep16_scaffold_942_15
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

18898..19494
DNA (597bp) protein (199aa)
LemA family protein Tax=Pedosphaera parvula Ellin514 RepID=B9XDI8_9BACT
LemA family protein {ECO:0000313|EMBL:KDA53584.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
LemA family protein
PLM3_60_b1_sep16_scaffold_942_16
uncultured Desulfobacterium sp., Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19495..20376
DNA (882bp) protein (294aa)
Putative uncharacterized protein Tax=uncultured Desulfobacterium sp. RepID=E1Y822_9DELT
Putative uncharacterized protein {ECO:0000313|EMBL:CBX26716.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium; environmental samples.;" source="uncultured Desulfobacterium sp.;"
hypothetical protein
PLM3_60_b1_sep16_scaffold_942_17
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

20363..20836
DNA (474bp) protein (158aa)
hypothetical protein Tax=Marinimicrobia bacterium JGI 0000039-D08 RepID=UPI0003AA7064
Uncharacterized protein {ECO:0000313|EMBL:AHM61204.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
hypothetical protein
Displaying 17 items

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