ggKbase home page

PLM3_60_b1_sep16_scaffold_4249

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_4249_1
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists

201..899
DNA (699bp) protein (233aa)
Response regulator with a HTH DNA-binding domain Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LRF9_SYNAS
response regulator
Tax=RBG_16_Chloroflexi_57_9_curated
PLM3_60_b1_sep16_scaffold_4249_2
RBG_13_ACD39_59_9_curated, ACD39, Bacteria

Not on your lists

1037..1186
DNA (150bp) protein (50aa)
Putative uncharacterized protein Tax=Chlorobium limicola (strain DSM 245 / NBRC 103803) RepID=B3EIP5_CHLL2
hypothetical protein
Tax=RBG_13_ACD39_59_9_curated
PLM3_60_b1_sep16_scaffold_4249_3
Candidatus Paracaedibacter acanthamoebae, Candidatus Paracaedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1261..1422
DNA (162bp) protein (54aa)
Uncharacterized protein Tax=Polaribacter sp. MED152 RepID=M4XP37_9FLAO
membrane protein
UPF0391 membrane protein ID47_02765 {ECO:0000256|HAMAP-Rule:MF_01361}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
PLM3_60_b1_sep16_scaffold_4249_4
unknown

Not on your lists

1426..2256
DNA (831bp) protein (277aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_4249_5
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

2305..2967
DNA (663bp) protein (221aa)
Lytic transglycosylase, catalytic Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJU5_9BACT
Lytic transglycosylase, catalytic
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM3_60_b1_sep16_scaffold_4249_6
unknown

Not on your lists

comp(3253..3969)
DNA (717bp) protein (239aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_4249_7
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4165..4986)
DNA (822bp) protein (274aa)
Penicillin-binding protein, 1A family Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CN50_SYNLT
penicillin-binding protein, 1A family
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_60_b1_sep16_scaffold_4249_8
Desulfococcus oleovorans, Desulfococcus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4955..5611)
DNA (657bp) protein (219aa)
1A family penicillin-binding protein (EC:2.4.1.129)
Penicillin-binding protein, 1A family {ECO:0000313|EMBL:ABW66718.1}; EC=2.4.1.129 {ECO:0000313|EMBL:ABW66718.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfococcus.;" source="Desulfococcus oleovorans (strain DSM 6200 / Hxd3).;"
Penicillin-binding protein, 1A family Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZWB0_DESOH
PLM3_60_b1_sep16_scaffold_4249_9
Thiorhodospira sibirica, Thiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5554..6291)
DNA (738bp) protein (246aa)
hypothetical protein Tax=Thioalkalivibrio sp. ALSr1 RepID=UPI00035D2C72
Penicillin-binding protein 1B {ECO:0000256|PIRNR:PIRNR002799}; Short=PBP-1b {ECO:0000256|PIRNR:PIRNR002799};; Short=PBP1b {ECO:0000256|PIRNR:PIRNR002799};; Murein polymerase {ECO:0000256|PIRNR:PIRNR002799}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thiorhodospira.;" source="Thiorhodospira sibirica ATCC 700588.;"
penicillin-binding protein 1B
PLM3_60_b1_sep16_scaffold_4249_10
RLO_PLX_64_10, Bacteria

Not on your lists

comp(6418..8466)
DNA (2049bp) protein (683aa)
PBS lyase HEAT-like repeat/cyclic nucleotide-binding domain protein Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D9I5_MYXXD
PBS lyase
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3_60_b1_sep16_scaffold_4249_11
Hyphomonas beringensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9801..9974
DNA (174bp) protein (58aa)
Uncharacterized protein Tax=Variovorax sp. CF313 RepID=J2TMV5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KCZ54092.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas beringensis.;"
hypothetical protein
PLM3_60_b1_sep16_scaffold_4249_12
unknown

Not on your lists

10484..10888
DNA (405bp) protein (135aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_4249_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(10968..12215)
DNA (1248bp) protein (416aa)
Putative uncharacterized protein Tax=uncultured marine bacterium 105 RepID=Q6SI42_9BACT
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3_60_b1_sep16_scaffold_4249_14
R_RIF_OD1_13_53_17, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

12424..12837
DNA (414bp) protein (138aa)
DoxX family protein bin=GWC2_Ignavibacteria_38_9 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria
DoxX
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_53_17_curated
PLM3_60_b1_sep16_scaffold_4249_15
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(13417..13998)
DNA (582bp) protein (194aa)
Catalase-peroxidase Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QD54_SPILD
catalase/peroxidase HPI
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_60_b1_sep16_scaffold_4249_16
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(13953..14105)
DNA (153bp) protein (51aa)
catalase (EC:1.11.1.6)
Catalase-peroxidase Tax=Crinalium epipsammum PCC 9333 RepID=K9W0X7_9CYAN
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
Displaying 16 items

View Taxonomy