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PLM3_60_b1_sep16_scaffold_4498

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_4498_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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1..912
DNA (912bp) protein (304aa)
iscS; cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase Tax=Candidatus Nitrospira defluvii RepID=D8P861_9BACT
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3_60_b1_sep16_scaffold_4498_2
Leptospirillum ferrooxidans, Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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979..1362
DNA (384bp) protein (128aa)
FeS cluster assembly scaffold IscU Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037E73A7
NifU {ECO:0000313|EMBL:AAO38290.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum ferrooxidans.;"
nitrogen fixation protein, NifU-like protein
PLM3_60_b1_sep16_scaffold_4498_3
R_Rokubacteria_69_13, Rokubacteria, Bacteria

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1374..1772
DNA (399bp) protein (133aa)
iscA; iron-sulfur cluster assembly protein IscA; K13628 iron-sulfur cluster assembly protein bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
iron-sulfur cluster assembly accessory protein
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM3_60_b1_sep16_scaffold_4498_4
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

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1829..2542
DNA (714bp) protein (238aa)
Co-chaperone protein HscB (Hsc20) Tax=Candidatus Nitrospira defluvii RepID=D8P864_9BACT
hscB; co-chaperone protein HscB
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_60_b1_sep16_scaffold_4498_5
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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2591..4477
DNA (1887bp) protein (629aa)
hscA; chaperone protein HscA; K04043 molecular chaperone DnaK bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
molecular chaperone DnaK
Tax=CSP1_6_Rokubacteria
PLM3_60_b1_sep16_scaffold_4498_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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4501..4701
DNA (201bp) protein (67aa)
Gsr2216 protein Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NIG7_GLOVI
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_60_b1_sep16_scaffold_4498_7
unknown

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4698..4790
DNA (93bp) protein (31aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_4498_8
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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4784..5761
DNA (978bp) protein (326aa)
Cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_01225}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
Cyclic pyranopterin monophosphate synthase Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SMN4_THEM7
GTP cyclohydrolase subunit MoaA
PLM3_60_b1_sep16_scaffold_4498_9
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

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5867..6937
DNA (1071bp) protein (357aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
Phosphomethylpyrimidine synthase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LI50_CHLTF
hydroxymethylpyrimidine synthase
PLM3_60_b1_sep16_scaffold_4498_10
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

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7150..7803
DNA (654bp) protein (218aa)
Uncharacterized protein bin=GWF2_Nitrospirae_44_13 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
Tax=GWF2_Nitrospirae_44_13_curated
PLM3_60_b1_sep16_scaffold_4498_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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7882..10494
DNA (2613bp) protein (871aa)
TonB-dependent receptor plug domain protein Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJJ2_9BACT
ferrienterochelin and colicins outer membrane receptor
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_b1_sep16_scaffold_4498_12
Vibrio sinaloensis, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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10695..11105
DNA (411bp) protein (137aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio sinaloensis.;"
Sensor protein TorS Tax=Vibrio ichthyoenteri ATCC 700023 RepID=F9RXL1_9VIBR
PLM3_60_b1_sep16_scaffold_4498_13
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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11108..11563
DNA (456bp) protein (152aa)
hypothetical protein Tax=Proteiniphilum acetatigenes RepID=UPI000382D7EB
two-component response regulator
Tax=RBG_13_Acidobacteria_68_16_curated
PLM3_60_b1_sep16_scaffold_4498_14
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

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11553..12380
DNA (828bp) protein (276aa)
Diguanylate cyclase (GGDEF) domain-containing protein bin=GWF2_Lentisphaerae_50_93 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
response regulator receiver modulated diguanylate cyclase
Tax=GWF2_Lentisphaerae_50_93_curated
PLM3_60_b1_sep16_scaffold_4498_15
unknown

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12377..12490
DNA (114bp) protein (38aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_4498_16

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comp(12471..14669)
DNA (2199bp) protein (733aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN59575.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
sulfatase bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
sulfatase
PLM3_60_b1_sep16_scaffold_4498_17
RBG_16_Planctomycetes_41_13_curated, Planctomycetes, Bacteria

Not on your lists

14756..15247
DNA (492bp) protein (164aa)
hypothetical protein Tax=Oscillatoria sp. PCC 10802 RepID=UPI000348D284
thermoresistant glucokinase family carbohydrate kinase
Tax=RBG_16_Planctomycetes_41_13_curated
PLM3_60_b1_sep16_scaffold_4498_18
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(15298..16710)
DNA (1413bp) protein (471aa)
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_b1_sep16_scaffold_4498_19
RBG_16_KB1_OP1_55_9_curated, KB1, Bacteria

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comp(16753..17376)
DNA (624bp) protein (208aa)
Saccharopine dehydrogenase Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HS96_CYAP4
saccharopine dehydrogenase
Tax=RBG_16_KB1_OP1_55_9_curated
Displaying 19 items

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