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PLM3_60_b1_sep16_scaffold_2811

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_2811_1
bacterium UASB14, Bacteria

Not on your lists

comp(81..2462)
DNA (2382bp) protein (794aa)
Putative uncharacterized protein Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVC8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:GAK51956.1}; species="Bacteria.;" source="bacterium UASB14.;"
hypothetical protein
PLM3_60_b1_sep16_scaffold_2811_2
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2806..3255
DNA (450bp) protein (150aa)
Uncharacterized protein Tax=Cystobacter fuscus DSM 2262 RepID=S9P304_9DELT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM3_60_b1_sep16_scaffold_2811_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(3236..3976)
DNA (741bp) protein (247aa)
exodeoxyribonuclease III Xth (EC:3.1.11.2)
Exodeoxyribonuclease III Xth Tax=Anaeromyxobacter sp. (strain K) RepID=B4UB53_ANASK
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_b1_sep16_scaffold_2811_4
unknown

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comp(4021..4956)
DNA (936bp) protein (312aa)
hypothetical protein Tax=Eudoraea adriatica RepID=UPI0003768DC7
PLM3_60_b1_sep16_scaffold_2811_5
RBG_16_Bathyarchaeota_57_9_curated, Bathyarchaeota, Archaea

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comp(5278..6144)
DNA (867bp) protein (289aa)
Amidinotransferase Tax=Aminomonas paucivorans DSM 12260 RepID=E3CWG3_9BACT
amidinotransferase
Tax=RBG_16_Bathyarchaeota_57_9_curated
PLM3_60_b1_sep16_scaffold_2811_6
Glaciecola pallidula, Glaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6220..6444)
DNA (225bp) protein (75aa)
Cro/Cl family transcriptional regulator Tax=Sphingopyxis baekryungensis RepID=UPI0003B3779B
Cro/CI family transcriptional regulator {ECO:0000313|EMBL:GAC28890.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Glaciecola.;" source="Glaciecola pallidula DSM 14239 = ACAM 615.;"
transcriptional regulator protein-like protein
PLM3_60_b1_sep16_scaffold_2811_7
unknown

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comp(6452..6841)
DNA (390bp) protein (130aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_2811_8
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(6964..8166)
DNA (1203bp) protein (401aa)
putative amidase family protein bin=bin1_lowGC species=Methylococcus capsulatus genus=Methylococcus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
putative amidase family protein
Tax=CSP1_2_Dadabacteria
PLM3_60_b1_sep16_scaffold_2811_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(8201..9070)
DNA (870bp) protein (290aa)
Amino acid transporter Tax=Plesiocystis pacifica SIR-1 RepID=A6FXX2_9DELT
Amino acid permease family protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM3_60_b1_sep16_scaffold_2811_10
Anoxybacillus sp. KU2-6(11), Anoxybacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9051..9503)
DNA (453bp) protein (151aa)
Amino acid transporter Tax=Anoxybacillus sp. DT3-1 RepID=M5QWN4_9BACI
Serine/threonine protein kinase {ECO:0000313|EMBL:KFZ43403.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Anoxybacillus.;" source="Anoxybacillus sp. KU2-6(11).;"
amino acid transporter
PLM3_60_b1_sep16_scaffold_2811_11
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9786..10184)
DNA (399bp) protein (133aa)
Glyoxalase/bleomycin resistance protein/dioxygenase Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LKA1_HALO1
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ACY13135.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
PLM3_60_b1_sep16_scaffold_2811_12
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

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comp(10188..10973)
DNA (786bp) protein (262aa)
Uncharacterized protein Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MSP5_9BACT
phosphomethylpyrimidine kinase
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_2811_13
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria

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comp(10979..12145)
DNA (1167bp) protein (389aa)
Putative uncharacterized protein bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
hypothetical protein
Tax=GWB2_Nitrospirae_47_37_curated
PLM3_60_b1_sep16_scaffold_2811_14
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

12384..14303
DNA (1920bp) protein (640aa)
Selenocysteine-specific translation elongation factor SelB Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHM2_KORVE
selenocysteine-specific translation elongation factor SelB
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3_60_b1_sep16_scaffold_2811_15
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

14307..14501
DNA (195bp) protein (65aa)
Sec-independent protein translocase protein TatA Tax=Sulfurihydrogenibium sp. (strain YO3AOP1) RepID=TATA_SULSY
twin-arginine translocation protein, TatA/E family subunit
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_2811_16
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

Not on your lists

comp(14505..16004)
DNA (1500bp) protein (500aa)
dipeptide ABC transporter substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA
Tax=RIFOXYC12_FULL_TA06_54_24_curated
PLM3_60_b1_sep16_scaffold_2811_17
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(16050..17165)
DNA (1116bp) protein (372aa)
DNA repair photolyase-like protein bin=GWA2_OP3_52_12 species=Desulfocapsa sulfexigens genus=Desulfocapsa taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
DNA repair photolyase-like protein
Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
PLM3_60_b1_sep16_scaffold_2811_18
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

17282..17968
DNA (687bp) protein (229aa)
Uncharacterized protein Tax=Holophaga foetida DSM 6591 RepID=H1P0R3_9BACT
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM3_60_b1_sep16_scaffold_2811_19
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17940..18164
DNA (225bp) protein (75aa)
thiamine biosynthesis protein ThiS Tax=Oceanicaulis alexandrii RepID=UPI0003B38326
Thiamine biosynthesis protein ThiS {ECO:0000313|EMBL:GAN79923.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
thiamine biosynthesis protein ThiS
PLM3_60_b1_sep16_scaffold_2811_20
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

18170..18958
DNA (789bp) protein (263aa)
Thiazole synthase Tax=Solibacter usitatus (strain Ellin6076) RepID=THIG_SOLUE
thiG; thiazole synthase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM3_60_b1_sep16_scaffold_2811_21
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

18955..20241
DNA (1287bp) protein (429aa)
hypothetical protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3_60_b1_sep16_scaffold_2811_22
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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20241..20648
DNA (408bp) protein (136aa)
Glycosyl transferase group 1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G3F4_CHLAD
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ACL25327.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aggregans (strain MD-66 / DSM 9485).;"
PLM3_60_b1_sep16_scaffold_2811_23

Not on your lists

20632..21093
DNA (462bp) protein (154aa)
glycosyl transferase Tax=Marinobacterium stanieri RepID=UPI0002559E8F
Marine sediment metagenome DNA, contig: S01H4_L02119 {ECO:0000313|EMBL:GAG64923.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
group 1 glycosyl transferase
PLM3_60_b1_sep16_scaffold_2811_24
GWB2_Deltaproteobacteria_55_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21197..22459
DNA (1263bp) protein (421aa)
Glycosyl transferase, group 1 family protein bin=GWB2_Proteobacteria_55_19 species=Methanosaeta concilii genus=Methanosaeta taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
group 1 glycosyl transferase
Tax=GWB2_Deltaproteobacteria_55_19_curated
PLM3_60_b1_sep16_scaffold_2811_25
unknown

Not on your lists

comp(22541..23134)
DNA (594bp) protein (198aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_2811_26
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

23170..24651
DNA (1482bp) protein (494aa)
4Fe-4S ferredoxin, iron-sulfur binding protein Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AVK3_RUBXD
4Fe-4S ferredoxin
4Fe-4S ferredoxin, iron-sulfur binding protein {ECO:0000313|EMBL:ABG04575.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3_60_b1_sep16_scaffold_2811_27
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24744..25013
DNA (270bp) protein (90aa)
nitrate reductase (EC:1.7.99.4)
Nitrate reductase Tax=Chloroflexus RepID=A9WIA3_CHLAA
Uncharacterized protein {ECO:0000313|EMBL:ETW99674.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Displaying 27 items

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