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PLM3_60_b1_sep16_scaffold_1314

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_1314_1
RBG_13_Spirochaetes_51_14_curated, Spirochaetes, Bacteria

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2..748
DNA (747bp) protein (249aa)
Putative membrane protein involved in D-alanine export bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
membrane bound O-acyl transferase MBOAT family protein
Tax=RBG_13_Spirochaetes_51_14_curated
PLM3_60_b1_sep16_scaffold_1314_2
RBG_13_Spirochaetes_51_14_curated, Spirochaetes, Bacteria

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748..1443
DNA (696bp) protein (232aa)
Uncharacterized protein Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8QZI9_OWEHD
hypothetical protein
Tax=RBG_13_Spirochaetes_51_14_curated
PLM3_60_b1_sep16_scaffold_1314_3
RIFOXYC2_FULL_OD1_Magasanikbacteria_39_8_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

1440..1871
DNA (432bp) protein (144aa)
Tax=RIFOXYC2_FULL_OD1_Magasanikbacteria_39_8_curated
PLM3_60_b1_sep16_scaffold_1314_4
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1890..2645)
DNA (756bp) protein (252aa)
Uncharacterized protein Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MJV2_9CLOT
hypothetical protein DUF2628
Uncharacterized protein {ECO:0000313|EMBL:AGF56588.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
PLM3_60_b1_sep16_scaffold_1314_5
Calothrix sp. PCC 7507, Calothrix, Nostocales, Cyanobacteria, Bacteria

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comp(2886..4529)
DNA (1644bp) protein (548aa)
TPR repeat-containing protein Tax=Calothrix sp. PCC 7507 RepID=K9PGN4_9CYAN
hypothetical protein
TPR repeat-containing protein {ECO:0000313|EMBL:AFY32313.1}; Flags: Precursor;; species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Calothrix.;" source="Calothrix sp. PCC 7507.;"
PLM3_60_b1_sep16_scaffold_1314_6
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4749..5228
DNA (480bp) protein (160aa)
MarR family transcriptional regulator Tax=Pseudomonas aeruginosa RepID=I6RUG4_PSEAI
MarR family transcriptional regulator
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
PLM3_60_b1_sep16_scaffold_1314_7
R_NC10_66_22, NC10, Bacteria

Not on your lists

5278..6126
DNA (849bp) protein (283aa)
Methyltransferase type 11 Tax=Desulfovibrio africanus str. Walvis Bay RepID=F3YWK0_DESAF
type 11 methyltransferase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_60_b1_sep16_scaffold_1314_8
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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6123..6560
DNA (438bp) protein (146aa)
hypothetical protein Tax=Dyadobacter beijingensis RepID=UPI000360B52F
gcn5-related N-acetyltransferase
Tax=RBG_13_Deltaproteobacteria_47_9_curated
PLM3_60_b1_sep16_scaffold_1314_9
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

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comp(6557..7138)
DNA (582bp) protein (194aa)
Putative membrane protein bin=GWC2_Nitrospirae_57_13 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
hypothetical protein
Tax=GWC2_Nitrospirae_57_13_curated
PLM3_60_b1_sep16_scaffold_1314_10
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7206..8828)
DNA (1623bp) protein (541aa)
Fumarase bin=GWC2_Proteo_65_14_Ab886 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3_60_b1_sep16_scaffold_1314_11
unknown

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8893..9426
DNA (534bp) protein (178aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_1314_12
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9650..10621)
DNA (972bp) protein (324aa)
Carbohydrate kinase, PfkB bin=GWC2_Nitrospirae-rel_56_14 species=Leptospirillum ferrodiazotrophum genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
PfkB domain-containing protein
Tax=RBG_16_Deltaproteobacteria_48_10_curated
PLM3_60_b1_sep16_scaffold_1314_13
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(10618..11859)
DNA (1242bp) protein (414aa)
O-antigen polymerase bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
O-antigen polymerase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3_60_b1_sep16_scaffold_1314_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(11885..12067)
DNA (183bp) protein (61aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037B6387
UPF0434 protein PYK22_02866 {ECO:0000256|HAMAP-Rule:MF_01187}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM3_60_b1_sep16_scaffold_1314_15
GWB2_Nitrospirae_47_37_curated, Nitrospirae, Bacteria

Not on your lists

12289..12537
DNA (249bp) protein (83aa)
Probable transcriptional regulatory protein THEYE_A1868 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
YebC/PmpR family DNA-binding regulatory protein
Tax=GWB2_Nitrospirae_47_37_curated
PLM3_60_b1_sep16_scaffold_1314_16

Not on your lists

12504..12830
DNA (327bp) protein (109aa)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI00037A3DFB
Uncharacterized protein {ECO:0000313|EMBL:KKM65584.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3_60_b1_sep16_scaffold_1314_17
endosymbiont of unidentified scaly snail isolate Monju, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12827..13354
DNA (528bp) protein (176aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="endosymbiont of unidentified scaly snail isolate Monju.;"
ruvC; Holliday junction resolvase (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6CGL9_9GAMM
PLM3_60_b1_sep16_scaffold_1314_18
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

13351..13941
DNA (591bp) protein (197aa)
ruvA; Holliday junction DNA helicase ruvA bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
ruvA; Holliday junction DNA helicase RuvA
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM3_60_b1_sep16_scaffold_1314_19
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

14119..14958
DNA (840bp) protein (280aa)
hypothetical protein Tax=Nitrospina sp. AB-629-B06 RepID=UPI000360185C
Holliday junction DNA helicase subunit RuvB
Tax=RBG_13_OP8X_37_8_curated
PLM3_60_b1_sep16_scaffold_1314_20
Dictyoglomus turgidum, Dictyoglomus, Dictyoglomales, Dictyoglomia, Dictyoglomi, Bacteria

Not on your lists

14959..15954
DNA (996bp) protein (332aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; species="Bacteria; Dictyoglomi; Dictyoglomales; Dictyoglomaceae; Dictyoglomus.;" source="Dictyoglomus turgidum (strain Z-1310 / DSM 6724).;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8E2N6_DICTD
S-adenosylmethionine/tRNA-ribosyltransferase-isomerase
PLM3_60_b1_sep16_scaffold_1314_21
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15995..16567
DNA (573bp) protein (191aa)
Phosphoheptose isomerase {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089187}; EC=5.3.1.28 {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089180};; Sedoheptulose 7-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00067}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
Phosphoheptose isomerase bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
phosphoheptose isomerase
Displaying 21 items

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