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PLM3_60_b1_sep16_scaffold_1477

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_b1_sep16_scaffold_1477_1
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

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1..1227
DNA (1227bp) protein (409aa)
Large extracellular alpha-helical protein bin=GWC2_Nitrospirae-rel_56_14 species=Magnetospirillum magneticum genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
large extracellular alpha-helical protein
Tax=GWC2_Nitrospirae_56_14_curated
PLM3_60_b1_sep16_scaffold_1477_2
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

1224..3671
DNA (2448bp) protein (816aa)
Membrane carboxypeptidase/penicillin-binding protein PbpC bin=GWC2_Nitrospirae-rel_56_14 species=Magnetospirillum magneticum genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
membrane carboxypeptidase/penicillin-binding protein PbpC
Tax=GWC2_Nitrospirae_56_14_curated
PLM3_60_b1_sep16_scaffold_1477_3
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

3829..5241
DNA (1413bp) protein (471aa)
hypothetical protein bin=bin1_lowGC species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=CSP1_2_Dadabacteria
PLM3_60_b1_sep16_scaffold_1477_4
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

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comp(5544..6407)
DNA (864bp) protein (288aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q028E9_SOLUE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM3_60_b1_sep16_scaffold_1477_5
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(6407..8050)
DNA (1644bp) protein (548aa)
Serine/threonine protein kinase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LKR1_CHLTF
serine/threonine protein kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
PLM3_60_b1_sep16_scaffold_1477_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(8097..8561)
DNA (465bp) protein (155aa)
Transcriptional regulator {ECO:0000313|EMBL:CDM66761.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
transcriptional regulator bin=BACIGN_2 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP
transcriptional regulator
PLM3_60_b1_sep16_scaffold_1477_7
Burkholderia sp. YI23, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8820..9518
DNA (699bp) protein (233aa)
Short-chain dehydrogenase/reductase SDR Tax=Burkholderia sp. YI23 RepID=G8MK39_9BURK
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AET93542.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. YI23.;"
PLM3_60_b1_sep16_scaffold_1477_8
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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9515..9904
DNA (390bp) protein (130aa)
Endoribonuclease L-PSP Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RRE6_9PROT
Bona fide RidA/YjgF/TdcF/RutC subgroup {ECO:0000313|EMBL:AKF07328.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
endoribonuclease L-PSP
PLM3_60_b1_sep16_scaffold_1477_9
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9904..10419
DNA (516bp) protein (172aa)
Transcriptional regulator, MarR family Tax=Sorangium cellulosum (strain So ce56) RepID=A9FQH7_SORC5
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:CAN92158.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
PLM3_60_b1_sep16_scaffold_1477_10
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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10442..11260
DNA (819bp) protein (273aa)
abmC; enoyl-CoA hydratase (EC:4.2.1.17)
Unsaturated acyl-CoA hydratase bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Amycolatopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3_60_b1_sep16_scaffold_1477_11
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

11327..12430
DNA (1104bp) protein (368aa)
Acyl-CoA dehydrogenases bin=GWD2_Deltaproteobacteria_55_8 species=uncultured nuHF2 cluster bacterium HF0500_39O04 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
acyl-CoA dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM3_60_b1_sep16_scaffold_1477_12
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12506..13450
DNA (945bp) protein (315aa)
NADH:flavin oxidoreductase Tax=Magnetospirillum sp. SO-1 RepID=M2Z4K1_9PROT
NADH:flavin oxidoreductase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM3_60_b1_sep16_scaffold_1477_13
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13392..13883
DNA (492bp) protein (164aa)
NADH:flavin oxidoreductase Tax=Magnetospirillum sp. SO-1 RepID=M2Z4I3_9PROT
NADH:flavin oxidoreductase {ECO:0000313|EMBL:EME69275.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
NADH:flavin oxidoreductase
PLM3_60_b1_sep16_scaffold_1477_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

13880..15070
DNA (1191bp) protein (397aa)
Kynureninase {ECO:0000313|EMBL:CDM66962.1}; EC=3.7.1.3 {ECO:0000313|EMBL:CDM66962.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
kynureninase (EC:3.7.1.3)
Kynureninase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q023I5_SOLUE
PLM3_60_b1_sep16_scaffold_1477_15
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

15074..15883
DNA (810bp) protein (270aa)
Tryptophan 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Short=TDO {ECO:0000256|HAMAP-Rule:MF_01972};; EC=1.13.11.11 {ECO:0000256|HAMAP-Rule:MF_01972};; Tryptamin 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan oxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan pyrrolase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophanase {ECO:0000256|HAMAP-Rule:MF_01972}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Tryptophan 2,3-dioxygenase (EC:1.13.11.11)
tryptophan 2 3-dioxygenase Tax=Kribbella catacumbae RepID=UPI00036B1445
PLM3_60_b1_sep16_scaffold_1477_16
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16099..16701
DNA (603bp) protein (201aa)
Creatininase Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LVM0_HALO1
creatininase
Creatininase {ECO:0000313|EMBL:ACY17581.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
PLM3_60_b1_sep16_scaffold_1477_17
RBG_19FT_COMBO_Chloroflexi_56_12_curated, Chloroflexi, Bacteria

Not on your lists

16708..17463
DNA (756bp) protein (252aa)
Putative uncharacterized protein Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MZK8_ANATU
hypothetical protein
Tax=RBG_19FT_COMBO_Chloroflexi_56_12_curated
PLM3_60_b1_sep16_scaffold_1477_18
RBG_19FT_COMBO_Chloroflexi_56_12_curated, Chloroflexi, Bacteria

Not on your lists

17463..18473
DNA (1011bp) protein (337aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI00036CF141
hypothetical protein
Tax=RBG_19FT_COMBO_Chloroflexi_56_12_curated
PLM3_60_b1_sep16_scaffold_1477_19
unknown

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18470..19021
DNA (552bp) protein (184aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_1477_20
unknown

Not on your lists

19140..19406
DNA (267bp) protein (89aa)

This feature has no annotations

PLM3_60_b1_sep16_scaffold_1477_21
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists


19625..21523
DNA (1899bp) protein (633aa)
metG; methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3PAF5_DEFDS
Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
PLM3_60_b1_sep16_scaffold_1477_22
CG_Ignavi_02, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

21564..23072
DNA (1509bp) protein (503aa)
cly:Celly_0422 histidine kinase bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
autoinducer kinase
Tax=CG_Ignavi_02
PLM3_60_b1_sep16_scaffold_1477_23
GWA1_OD1_35_8_very_partial, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

23087..23392
DNA (306bp) protein (102aa)
Uncharacterized protein Tax=Blastopirellula marina DSM 3645 RepID=A3ZQH4_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:KKP85692.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA1_35_8.;"
hypothetical protein
PLM3_60_b1_sep16_scaffold_1477_24
GWC2_Deltaproteobacteria_55_46b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23575..24303
DNA (729bp) protein (243aa)
id=15192900 bin=GWC2_NOV_55_46 tax=GWC2_NOV_55_46 organism_group=Proteobacteria
Tax=GWC2_Deltaproteobacteria_55_46b_curated
Displaying 24 items

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