ggKbase home page

PLM3_60_coex_sep16_scaffold_36

Search features with annotation key words

Displaying items 1-30 of 87 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_36_1
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1189..1539
DNA (351bp) protein (117aa)
Uncharacterized protein Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ERF9_METSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK51011.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
PLM3_60_coex_sep16_scaffold_36_2
GWA2_Gallionellales_54_124_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1532..3229
DNA (1698bp) protein (566aa)
Putative resolvase Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J5U5_HYPSM
resolvase
Tax=GWA2_Gallionellales_54_124_curated
PLM3_60_coex_sep16_scaffold_36_trna_1
unknown

Not on your lists

comp(3552..3622)
DNA (71bp)
transferRNA Gln
PLM3_60_coex_sep16_scaffold_36_3
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3706..4635)
DNA (930bp) protein (310aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase Tax=Phaeospirillum molischianum DSM 120 RepID=H8FUI0_PHAMO
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; isopentenyl monophosphate kinase
PLM3_60_coex_sep16_scaffold_36_4
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4632..6371)
DNA (1740bp) protein (580aa)
Uncharacterized protein Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZHE5_AZOL4
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
PLM3_60_coex_sep16_scaffold_36_5
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6411..8039)
DNA (1629bp) protein (543aa)
Dehydrogenase Tax=Oceanibaculum indicum P24 RepID=K2J635_9PROT
Dehydrogenase {ECO:0000313|EMBL:EKE78531.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
etfD; electron transfer flavoprotein-ubiquinone oxidoreductase
PLM3_60_coex_sep16_scaffold_36_6
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8134..8955
DNA (822bp) protein (274aa)
Putative uracil-DNA glycosylase {ECO:0000313|EMBL:CCD00214.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CCD00214.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
Putative uracil-DNA glycosylase Tax=Azospirillum brasilense Sp245 RepID=G8AS03_AZOBR
putative uracil-DNA glycosylase
PLM3_60_coex_sep16_scaffold_36_7
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9063..10661
DNA (1599bp) protein (533aa)
Soluble lytic murein transglycosylase Tax=Phaeospirillum fulvum MGU-K5 RepID=S9S3E8_PHAFV
Transglycosylase {ECO:0000313|EMBL:KJB92151.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
transglycosylase
PLM3_60_coex_sep16_scaffold_36_8
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10648..11190
DNA (543bp) protein (181aa)
Molybdenum cofactor biosynthesis protein B Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IW74_RHOCS
Molybdenum cofactor biosynthesis protein B {ECO:0000256|PIRNR:PIRNR006443}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
moaB; molybdenum cofactor biosynthesis protein B
PLM3_60_coex_sep16_scaffold_36_9
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11205..12281)
DNA (1077bp) protein (359aa)
A/G-specific adenine glycosylase Tax=Oceanibaculum indicum P24 RepID=K2JWV5_9PROT
A/G-specific adenine glycosylase {ECO:0000313|EMBL:EKE74764.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
mutY; A/G-specific adenine glycosylase
PLM3_60_coex_sep16_scaffold_36_10
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12339..12833
DNA (495bp) protein (165aa)
Uncharacterized protein Tax=Azospirillum sp. (strain B510) RepID=D3P3X1_AZOS1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI75350.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
PLM3_60_coex_sep16_scaffold_36_11
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12958..13791
DNA (834bp) protein (278aa)
DsbA oxidoreductase Tax=Fodinicurvata sediminis RepID=UPI0003B72BBB
Periplasmic thiol:disulfide interchange protein DsbA {ECO:0000313|EMBL:EYD74676.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
putative disulfide bond formation protein D
PLM3_60_coex_sep16_scaffold_36_12
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13832..17293
DNA (3462bp) protein (1154aa)
Chromosome partition protein Smc Tax=Caenispirillum salinarum AK4 RepID=K9HWN1_9PROT
smc; chromosome segregation protein SMC
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
PLM3_60_coex_sep16_scaffold_36_13
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17434..17769
DNA (336bp) protein (112aa)
ATP synthase protein I Tax=Phaeospirillum molischianum DSM 120 RepID=H8FW37_PHAMO
Uncharacterized protein {ECO:0000313|EMBL:KGM34588.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
atpI; ATP synthase protein I
PLM3_60_coex_sep16_scaffold_36_14
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17813..18634
DNA (822bp) protein (274aa)
atpB; ATP synthase subunit A, membrane-bound, F0 sector (EC:3.6.3.14)
ATP synthase subunit a Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TPC9_TISMK
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM3_60_coex_sep16_scaffold_36_15
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18669..18896
DNA (228bp) protein (76aa)
ATP synthase C chain (EC:3.6.3.14)
F0F1 ATP synthase subunit C Tax=Kordiimonas gwangyangensis RepID=UPI00035DCFC2
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM3_60_coex_sep16_scaffold_36_16
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19011..19694
DNA (684bp) protein (228aa)
ATP synthase subunit b Tax=Sinorhizobium fredii USDA 257 RepID=I3WZT7_RHIFR
atpG1; ATP synthase subunit b/b'
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
PLM3_60_coex_sep16_scaffold_36_17
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19697..20185
DNA (489bp) protein (163aa)
ATP synthase subunit b Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=ATPF_MAGSA
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
ATP synthase B chain precursor
PLM3_60_coex_sep16_scaffold_36_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20190..20660)
DNA (471bp) protein (157aa)
protein-S-isoprenylcysteine methyltransferase Tax=Rhizobium leguminosarum RepID=UPI00036819A4
Isoprenylcysteine carboxyl methyltransferase {ECO:0000313|EMBL:KFC74524.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
phospholipid methyltransferase protein
PLM3_60_coex_sep16_scaffold_36_19
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20689..21219)
DNA (531bp) protein (177aa)
GCN5 family N-acetyltransferase Tax=Fodinicurvata sediminis RepID=UPI0003B32A0F
Uncharacterized protein {ECO:0000313|EMBL:KGM35910.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
putative spermidine/spermine N-acetyltransferase
PLM3_60_coex_sep16_scaffold_36_20
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21247..22779)
DNA (1533bp) protein (511aa)
Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|SAAS:SAAS00022796}; EC=1.4.4.2 {ECO:0000256|SAAS:SAAS00022796};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
gcvPB; glycine dehydrogenase subunit 2 (EC:1.4.4.2)
Glycine dehydrogenase subunit 2 Tax=Oceanibaculum indicum P24 RepID=K2JNR4_9PROT
PLM3_60_coex_sep16_scaffold_36_21
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22776..24122)
DNA (1347bp) protein (449aa)
Probable glycine dehydrogenase (decarboxylating) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00015358}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00022796};; Glycine cleavage system P-protein subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine decarboxylase subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine dehydrogenase (aminomethyl-transferring) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
Probable glycine dehydrogenase [decarboxylating] subunit 1 Tax=Oceanibaculum indicum P24 RepID=K2JQV9_9PROT
glycine dehydrogenase
PLM3_60_coex_sep16_scaffold_36_22
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24122..24499)
DNA (378bp) protein (126aa)
Glycine cleavage system H protein Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=GCSH_PARL1
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
glycine cleavage system protein H
PLM3_60_coex_sep16_scaffold_36_23
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24510..25631)
DNA (1122bp) protein (374aa)
gcvT; glycine cleavage system T protein (EC:2.1.2.10)
Aminomethyltransferase {ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|RuleBase:RU003981};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
Aminomethyltransferase Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IXI1_RHOCS
PLM3_60_coex_sep16_scaffold_36_24
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25977..26579)
DNA (603bp) protein (201aa)
Uncharacterized protein Tax=Caenispirillum salinarum AK4 RepID=K9HVP3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKV32306.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_36_25
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26593..26832)
DNA (240bp) protein (80aa)
Uncharacterized protein Tax=Magnetospirillum sp. SO-1 RepID=M3AF41_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EME71184.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_36_26
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27025..27975
DNA (951bp) protein (317aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase Tax=Oceanibaculum indicum P24 RepID=K2JQV5_9PROT
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
PLM3_60_coex_sep16_scaffold_36_27
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28008..28970
DNA (963bp) protein (321aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085804}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00301};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00301};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085809};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
thrB; homoserine kinase type II (EC:2.7.1.39)
Homoserine kinase Tax=Azospirillum sp. (strain B510) RepID=D3NUU6_AZOS1
PLM3_60_coex_sep16_scaffold_36_28
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29039..30376
DNA (1338bp) protein (446aa)
hypothetical protein Tax=Actinokineospora enzanensis RepID=UPI0003732546
L-amino-acid oxidase
L-amino-acid oxidase {ECO:0000313|EMBL:CCH31746.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
PLM3_60_coex_sep16_scaffold_36_29
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30404..31171
DNA (768bp) protein (256aa)
Uncharacterized protein Tax=Lutibaculum baratangense AMV1 RepID=V4QYM5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESR24852.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
beta-lactamase
Displaying items 1-30 of 87 in total

View Taxonomy