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PLM3_60_coex_sep16_scaffold_100

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_100_1
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..761)
DNA (759bp) protein (253aa)
DNA mismatch repair protein MutL Tax=Phaeospirillum molischianum DSM 120 RepID=H8FUL6_PHAMO
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
mutL; DNA mismatch repair protein MutL
PLM3_60_coex_sep16_scaffold_100_2
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(879..2255)
DNA (1377bp) protein (459aa)
putative Zn-dependent protease (EC:3.4.24.-)
Putative Zn-dependent protease Tax=Oceanibaculum indicum P24 RepID=K2J5S4_9PROT
Putative Zn-dependent protease {ECO:0000313|EMBL:EKE70202.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
PLM3_60_coex_sep16_scaffold_100_3
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2252..3610)
DNA (1359bp) protein (453aa)
Putative Zn-dependent protease Tax=Oceanibaculum indicum P24 RepID=K2IJB8_9PROT
Putative Zn-dependent protease {ECO:0000313|EMBL:EKE70201.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
putative Zn-dependent protease
PLM3_60_coex_sep16_scaffold_100_4
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3714..4280)
DNA (567bp) protein (189aa)
Uncharacterized protein Tax=Phaeospirillum fulvum MGU-K5 RepID=S9S699_PHAFV
Uncharacterized protein {ECO:0000313|EMBL:KJV09860.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_100_5
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4293..4829)
DNA (537bp) protein (179aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
Lipoprotein signal peptidase Tax=Azospirillum brasilense Sp245 RepID=G8AJG5_AZOBR
peptidase A8
PLM3_60_coex_sep16_scaffold_100_6
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4836..7691)
DNA (2856bp) protein (952aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
ileS; isoleucine--tRNA ligase (EC:6.1.1.5)
Isoleucine--tRNA ligase Tax=alpha proteobacterium BAL199 RepID=A8TSH2_9PROT
PLM3_60_coex_sep16_scaffold_100_7
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7699..8775)
DNA (1077bp) protein (359aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
Riboflavin kinase and FAD synthetase Tax=Azospirillum brasilense Sp245 RepID=G8AJG9_AZOBR
riboflavin kinase
PLM3_60_coex_sep16_scaffold_100_8
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8923..9372)
DNA (450bp) protein (150aa)
phaJ; (R)-specific trans-2,3-enoyl acyl-CoA hydratase (MaoC dehydratase family) (EC:4.2.1.17)
Acyl dehydratase Tax=Oceanibaculum indicum P24 RepID=K2J2S6_9PROT
MaoC family dehydratase {ECO:0000313|EMBL:EWY41058.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
PLM3_60_coex_sep16_scaffold_100_9
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9610..11046)
DNA (1437bp) protein (479aa)
amidase (EC:3.5.1.4)
Amidase Tax=Oceanibaculum indicum P24 RepID=K2IZE3_9PROT
Amidase {ECO:0000313|EMBL:EKE68248.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
PLM3_60_coex_sep16_scaffold_100_10
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11163..11888
DNA (726bp) protein (242aa)
Uncharacterized protein {ECO:0000313|EMBL:KJC36966.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
PLM3_60_coex_sep16_scaffold_100_11
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

12018..13205
DNA (1188bp) protein (396aa)
hypothetical protein Tax=zeta proteobacterium SCGC AB-133-G06 RepID=UPI0003790AFD
Na+/H+ antiporter NhaA
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3_60_coex_sep16_scaffold_100_12
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13202..14758)
DNA (1557bp) protein (519aa)
methyltransferase Tax=Hoeflea sp. 108 RepID=UPI00037165D6
Trimethylamine methyltransferase {ECO:0000313|EMBL:CDX12512.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
trimethylamine methyltransferase
PLM3_60_coex_sep16_scaffold_100_13
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14876..16105
DNA (1230bp) protein (410aa)
Uncharacterized protein Tax=alpha proteobacterium BAL199 RepID=A8TRK0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP64552.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
major facilitator superfamily protein
PLM3_60_coex_sep16_scaffold_100_14
GWC2_ACD39_50_8_curated, ACD39, Bacteria

Not on your lists

16296..19406
DNA (3111bp) protein (1037aa)
Multi-sensor hybrid histidine kinase bin=GWC2_ACD39_50_8 species=ACD39 genus=ACD39 taxon_order=ACD39 taxon_class=ACD39 phylum=unknown tax=GWC2_ACD39_50_8 organism_group=ACD39
hypothetical protein
Tax=GWC2_ACD39_50_8_curated
PLM3_60_coex_sep16_scaffold_100_15
RIFOXYD12_FULL_Rhodospirillales_60_8_curated, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19408..19905
DNA (498bp) protein (166aa)
hypothetical protein Tax=Kiloniella laminariae RepID=UPI0003765652
Conserved protein of unknown function
Tax=RIFOXYD12_FULL_Rhodospirillales_60_8_curated
PLM3_60_coex_sep16_scaffold_100_16
Acetobacter sp. CAG:977, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19935..20588)
DNA (654bp) protein (218aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; environmental samples.;" source="Acetobacter sp. CAG:977.;"
Uracil phosphoribosyltransferase Tax=Acetobacter sp. CAG:977 RepID=R5QKN4_9PROT
uracil phosphoribosyltransferase
PLM3_60_coex_sep16_scaffold_100_17
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20585..21742)
DNA (1158bp) protein (386aa)
Uncharacterized protein Tax=Caenispirillum salinarum AK4 RepID=K9H2K7_9PROT
MFS transporter permease {ECO:0000313|EMBL:KJB95054.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
putative Permease of the major facilitator superfamily
PLM3_60_coex_sep16_scaffold_100_18
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21756..23096)
DNA (1341bp) protein (447aa)
Thymidine phosphorylase {ECO:0000256|SAAS:SAAS00031984}; EC=2.4.2.4 {ECO:0000256|SAAS:SAAS00031985};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
Thymidine phosphorylase Tax=Desulfovibrio desulfuricans ND132 RepID=F0JBQ5_DESDE
thymidine phosphorylase
PLM3_60_coex_sep16_scaffold_100_19
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23099..24013)
DNA (915bp) protein (305aa)
Deoxyribose-phosphate aldolase {ECO:0000256|SAAS:SAAS00058202}; EC=4.1.2.4 {ECO:0000256|SAAS:SAAS00058202};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
2-deoxyribose-5-phosphate aldolase protein Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J2T3_POLGS
deoC; 2-deoxyribose-5-phosphate aldolase
PLM3_60_coex_sep16_scaffold_100_20
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24003..24827)
DNA (825bp) protein (275aa)
Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477, ECO:0000313|EMBL:KJB92889.1}; EC=2.4.2.1 {ECO:0000256|PIRNR:PIRNR000477};; Inosine-guanosine phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
Purine nucleoside phosphorylase Tax=Azospirillum brasilense Sp245 RepID=G8AKI1_AZOBR
xapA; purine nucleoside phosphorylase II
PLM3_60_coex_sep16_scaffold_100_21
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24983..25363)
DNA (381bp) protein (127aa)
cdd; cytidine deaminase (EC:3.5.4.5)
Cytidine deaminase Tax=Azospirillum sp. (strain B510) RepID=D3NZW9_AZOS1
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM3_60_coex_sep16_scaffold_100_22
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25379..26353)
DNA (975bp) protein (325aa)
Inner-membrane translocator Tax=Rhizobium sp. (strain NGR234) RepID=C3MBG7_RHISN
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:ACP27176.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
PLM3_60_coex_sep16_scaffold_100_23
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26350..27462)
DNA (1113bp) protein (371aa)
Putative ABC transporter, permease component Tax=Azospirillum brasilense Sp245 RepID=G8AKH8_AZOBR
putative ABC transporter, permease component
Sugar ABC transporter permease {ECO:0000313|EMBL:AIB12121.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
PLM3_60_coex_sep16_scaffold_100_24
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27466..29079)
DNA (1614bp) protein (538aa)
sugar ABC transporter ATP-binding protein (EC:3.6.3.17)
ABC transporter ATP-binding component Tax=Azospirillum brasilense Sp245 RepID=G8AKH7_AZOBR
Heme ABC transporter ATP-binding protein {ECO:0000313|EMBL:EWY37629.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
PLM3_60_coex_sep16_scaffold_100_25
Thalassospira permensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29086..30075)
DNA (990bp) protein (330aa)
hypothetical protein Tax=Kiloniella laminariae RepID=UPI00037A94AF
Membrane protein {ECO:0000313|EMBL:KEO59123.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira permensis NBRC 106175.;"
nucleoside ABC transporter substrate-binding protein
PLM3_60_coex_sep16_scaffold_100_26
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30230..31090)
DNA (861bp) protein (287aa)
Uncharacterized protein Tax=Sorangium cellulosum So0157-2 RepID=S4Y5J8_SORCE
Uncharacterized protein {ECO:0000313|EMBL:KFA88633.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_100_27
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31304..32020
DNA (717bp) protein (239aa)
Arginine-binding periplasmic protein 1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SSE1_RHOPH
Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGM35291.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
artI; Arginine-binding periplasmic protein 1
PLM3_60_coex_sep16_scaffold_100_28

Not on your lists

32185..32892
DNA (708bp) protein (236aa)
5-methyltetrahydrofolate--homocysteine methyltransferase Tax=Fodinicurvata sediminis RepID=UPI0003B66158
5-methyltetrahydrofolate--homocysteine methyltransferase {ECO:0000313|EMBL:BAP28517.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
metH; Corrinoid methyltransferase
PLM3_60_coex_sep16_scaffold_100_29
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32986..35160
DNA (2175bp) protein (725aa)
NADH:flavin oxidoreductase/NADH oxidase Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B9H3_9RHIZ
NADH:flavin oxidoreductase/NADH oxidase
NADH:flavin oxidoreductase/NADH oxidase {ECO:0000313|EMBL:AGK56730.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
PLM3_60_coex_sep16_scaffold_100_30
unknown

Not on your lists

comp(35292..35798)
DNA (507bp) protein (169aa)
hypothetical protein Tax=Bradyrhizobium japonicum RepID=UPI000379F922
Displaying items 1-30 of 41 in total

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