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PLM3_60_coex_sep16_scaffold_169

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_169_1
unknown

Not on your lists

comp(2..334)
DNA (333bp) protein (111aa)
Cytochrome c-type biogenesis protein ccl1 Tax=Rhodobacter capsulatus RepID=CCMF_RHOCB
ccmF; cytochrome c-type biogenesis protein CcmF
Heme lyase, CcmF subunit {ECO:0000313|EMBL:CPR22007.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
PLM3_60_coex_sep16_scaffold_169_2
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(367..1431)
DNA (1065bp) protein (355aa)
hypothetical protein Tax=Methylobacter marinus RepID=UPI000381B32D
Uncharacterized protein {ECO:0000313|EMBL:KJB92122.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
glycosyl transferase, family 3
PLM3_60_coex_sep16_scaffold_169_3
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1447..2598)
DNA (1152bp) protein (384aa)
Putative hydrolase/peptidase Tax=Lutibaculum baratangense AMV1 RepID=V4QTT8_9RHIZ
Putative hydrolase/peptidase {ECO:0000313|EMBL:ESR23187.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
peptidase M24
PLM3_60_coex_sep16_scaffold_169_4
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2905..3300
DNA (396bp) protein (132aa)
hypothetical protein Tax=Kaistia granuli RepID=UPI0003815295
Uncharacterized protein {ECO:0000313|EMBL:EWY35748.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
Cytochrome c
PLM3_60_coex_sep16_scaffold_169_5
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3437..4648
DNA (1212bp) protein (404aa)
5-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; EC=2.3.1.37 {ECO:0000256|RuleBase:RU910713};; 5-aminolevulinic acid synthase {ECO:0000256|RuleBase:RU910713}; Delta-ALA synthase {ECO:0000256|RuleBase:RU910713}; Delta-aminolevulinate synthase {ECO:0000256|RuleBase:RU910713}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
5-aminolevulinate synthase Tax=Methylobacterium sp. (strain 4-46) RepID=B0UDL7_METS4
5-aminolevulinate synthase
PLM3_60_coex_sep16_scaffold_169_6
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4822..6135
DNA (1314bp) protein (438aa)
glutamine synthetase Tax=Desulfospira joergensenii RepID=UPI0003B3C22C
Glutamine synthetase {ECO:0000313|EMBL:KFB10859.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_169_7
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6222..6896
DNA (675bp) protein (225aa)
Isochorismatase Tax=Nitratireductor aquibiodomus RA22 RepID=I5C7Z9_9RHIZ
Isochorismatase {ECO:0000313|EMBL:EIM77951.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_169_8
Nocardia asteroides, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6981..8573
DNA (1593bp) protein (531aa)
Branched-chain amino acid ABC transporter ATP-binding protein Tax=Nocardia asteroides NBRC 15531 RepID=U5ECM3_NOCAS
Branched-chain amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAD85105.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia asteroides NBRC 15531.;"
ABC transporter
PLM3_60_coex_sep16_scaffold_169_9
RBG_13_Deltaproteobacteria_49_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8579..9475
DNA (897bp) protein (299aa)
ABC transporter permease Tax=Fodinicurvata sediminis RepID=UPI0003B4AB9E
high affinity branched-chain amino acid ABC transporter permease
Tax=RBG_13_Deltaproteobacteria_49_15_curated
PLM3_60_coex_sep16_scaffold_169_10
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

9480..10541
DNA (1062bp) protein (354aa)
Putative branched-chain amino acid ABC transporter permease protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I6F8_CALAS
putative branched-chain amino acid ABC transporter permease
Putative branched-chain amino acid ABC transporter permease protein {ECO:0000313|EMBL:BAM00846.1}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
PLM3_60_coex_sep16_scaffold_169_11
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

10580..11737
DNA (1158bp) protein (386aa)
Putative branched-chain amino acid ABC transporter substrate binding protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I6F7_CALAS
putative branched-chain amino acid ABC transporter substrate binding protein
Putative branched-chain amino acid ABC transporter substrate binding protein {ECO:0000313|EMBL:BAM00845.1}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
PLM3_60_coex_sep16_scaffold_169_12
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11879..12379)
DNA (501bp) protein (167aa)
Phasin Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QJX7_BRESC
phasin
Phasin {ECO:0000313|EMBL:ADK99728.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
PLM3_60_coex_sep16_scaffold_169_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12825..14819
DNA (1995bp) protein (665aa)
Putative uncharacterized protein Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q217L3_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD87423.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
PLM3_60_coex_sep16_scaffold_169_14
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14822..15910
DNA (1089bp) protein (363aa)
hypothetical protein Tax=Methylopila sp. M107 RepID=UPI00036F091D
putative ribonuclease BN
Putative ribonuclease BN {ECO:0000313|EMBL:ABS65566.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
PLM3_60_coex_sep16_scaffold_169_15
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15974..16618)
DNA (645bp) protein (215aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI0003764B6A
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AIB14715.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
PLM3_60_coex_sep16_scaffold_169_16
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16764..17885
DNA (1122bp) protein (374aa)
Multidrug resistance efflux pump (ErmK-like) Tax=Azospirillum brasilense Sp245 RepID=G8ATR3_AZOBR
hemolysin D
Hemolysin D {ECO:0000313|EMBL:AIB14714.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
PLM3_60_coex_sep16_scaffold_169_17
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17921..19528
DNA (1608bp) protein (536aa)
Major facilitator superfamily permease Tax=Azospirillum sp. (strain B510) RepID=D3P091_AZOS1
MFS transporter
MFS transporter {ECO:0000313|EMBL:AIB14713.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
PLM3_60_coex_sep16_scaffold_169_18
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19715..21853
DNA (2139bp) protein (713aa)
Small-conductance mechanosensitive channel Tax=Microvirga sp. WSM3557 RepID=I4YYT0_9RHIZ
Mechanosensitive ion channel protein {ECO:0000313|EMBL:EWY38704.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
mechanosensitive ion channel MscS-like protein
PLM3_60_coex_sep16_scaffold_169_19
unknown

Not on your lists

22281..22604
DNA (324bp) protein (108aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_169_20
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22619..23440)
DNA (822bp) protein (274aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G4V5_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ26823.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM3_60_coex_sep16_scaffold_169_21
unknown

Not on your lists

23845..24273
DNA (429bp) protein (143aa)
hypothetical protein Tax=Hyphomicrobium zavarzinii RepID=UPI000362E43E
Uncharacterized protein {ECO:0000313|EMBL:CPR22376.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_169_22
unknown

Not on your lists

24360..24539
DNA (180bp) protein (60aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_169_23
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24748..25194
DNA (447bp) protein (149aa)
Ion transport 2 domain protein Tax=Rhizobium sp. PDO1-076 RepID=H4EZU6_9RHIZ
Ion transport 2 domain protein {ECO:0000313|EMBL:EHS54038.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
Ion transport 2 domain-containing protein
PLM3_60_coex_sep16_scaffold_169_24
Pseudomonas sp. GM102, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25319..27046
DNA (1728bp) protein (576aa)
High affinity sulfate transporter 1 Tax=Pseudomonas sp. GM102 RepID=J2V8B1_9PSED
High affinity sulfate transporter 1 {ECO:0000313|EMBL:EJL99602.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM102.;"
sulfate transport protein
PLM3_60_coex_sep16_scaffold_169_25
Intrasporangium calvum, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27977..28534
DNA (558bp) protein (186aa)
Putative uncharacterized protein Tax=Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7 KIP) RepID=E6S851_INTC7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU46955.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 /; NBRC 12989 / 7 KIP).;"
PLM3_60_coex_sep16_scaffold_169_26
unknown

Not on your lists

comp(29011..29781)
DNA (771bp) protein (257aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_169_27
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(30500..30814)
DNA (315bp) protein (105aa)
Transcriptional regulator, HxlR family Tax=Chthoniobacter flavus Ellin428 RepID=B4D1Y7_9BACT
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:EDY19749.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
HxlR family transcriptional regulator
PLM3_60_coex_sep16_scaffold_169_28
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31079..31843
DNA (765bp) protein (255aa)
hypothetical protein Tax=Variovorax paradoxus RepID=UPI00035C452F
hypothetical protein
Putative Major facilitator superfamily (MFS_1) transporter {ECO:0000313|EMBL:CCE01185.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
PLM3_60_coex_sep16_scaffold_169_29
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31851..32354)
DNA (504bp) protein (168aa)
Thiol:disulfide interchange protein TlpA Tax=Oceanibaculum indicum P24 RepID=K2JUT5_9PROT
Thiol:disulfide interchange protein TlpA {ECO:0000313|EMBL:EKE78292.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
thiol:disulfide interchange protein
PLM3_60_coex_sep16_scaffold_169_30
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32926..34494)
DNA (1569bp) protein (523aa)
Uncharacterized protein Tax=Burkholderia pseudomallei RepID=Q63LM1_BURPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABN94285.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (strain 1106a).;"
Displaying items 1-30 of 58 in total

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