ggKbase home page

PLM3_60_coex_sep16_scaffold_401

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_401_1
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..595)
DNA (594bp) protein (198aa)
AraC family transcriptional regulator Tax=Burkholderia kururiensis RepID=UPI00034BED09
DeoR family transcriptional regulator
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
PLM3_60_coex_sep16_scaffold_401_2
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

855..2876
DNA (2022bp) protein (674aa)
hypothetical protein Tax=Desulfobacter curvatus RepID=UPI00036E0608
ABC-type dipeptide transport system, periplasmic component {ECO:0000313|EMBL:AKI00533.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
PLM3_60_coex_sep16_scaffold_401_3
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2946..3932
DNA (987bp) protein (329aa)
ABC transporter permease Tax=Roseomonas sp. B5 RepID=UPI0003035D31
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:AKI00532.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
dipeptide/oligopeptide ABC transporter permease protein
PLM3_60_coex_sep16_scaffold_401_4
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3929..5056
DNA (1128bp) protein (376aa)
Binding-protein-dependent transport systems inner membrane component Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8E3A4_DICTD
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:AKI00531.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
binding-protein-dependent transport system inner membrane protein
PLM3_60_coex_sep16_scaffold_401_5
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5063..6058
DNA (996bp) protein (332aa)
Oligopeptide ABC transporter, ATP-binding protein Tax=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) RepID=B9K779_THENN
Oligopeptide/dipeptide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AKI00530.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
Oligopeptide ABC transporter, ATP-binding protein
PLM3_60_coex_sep16_scaffold_401_6
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6051..7130
DNA (1080bp) protein (360aa)
Oligopeptide ABC transporter ATP-binding protein Tax=uncultured marine bacterium 1n22 RepID=D2DIQ9_9BACT
Oligopeptide/dipeptide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AKI00529.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
oligopeptide/dipeptide ABC transporter ATPase
PLM3_60_coex_sep16_scaffold_401_7
unknown

Not on your lists

7606..7932
DNA (327bp) protein (109aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_401_8
unknown

Not on your lists

comp(8049..8444)
DNA (396bp) protein (132aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_401_9
unknown

Not on your lists

comp(8441..8641)
DNA (201bp) protein (67aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_401_10
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9052..9333
DNA (282bp) protein (94aa)
hypothetical protein Tax=Rhizobium loti RepID=UPI00037213DA
CopG family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM3_60_coex_sep16_scaffold_401_11
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9330..9644
DNA (315bp) protein (105aa)
Plasmid stabilization system Tax=Bradyrhizobium sp. STM 3843 RepID=H0TE27_9BRAD
plasmid stabilization system protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM3_60_coex_sep16_scaffold_401_12
unknown

Not on your lists

comp(9840..10049)
DNA (210bp) protein (70aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_401_13
unknown

Not on your lists

10140..10343
DNA (204bp) protein (68aa)
hypothetical protein Tax=Sphingomonas wittichii RepID=UPI0003811774
PLM3_60_coex_sep16_scaffold_401_14
unknown

Not on your lists

10410..10592
DNA (183bp) protein (61aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_401_15
unknown

Not on your lists

10683..10994
DNA (312bp) protein (104aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_401_16
unknown

Not on your lists

comp(11356..12300)
DNA (945bp) protein (315aa)
Transcriptional regulator, LysR family Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ELS7_METSB
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CPR17365.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
LysR family transcriptional regulator
PLM3_60_coex_sep16_scaffold_401_17
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12404..12739
DNA (336bp) protein (112aa)
Uncharacterized protein Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D5K7_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL12278.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
PLM3_60_coex_sep16_scaffold_401_18
Pseudomonas sp. GM50, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12881..13384
DNA (504bp) protein (168aa)
Ketosteroid isomerase-like protein Tax=Pseudomonas sp. GM50 RepID=J3GNY9_9PSED
Ketosteroid isomerase-like protein {ECO:0000313|EMBL:EJM70507.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM50.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_401_19
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13908..15620)
DNA (1713bp) protein (571aa)
Bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein {ECO:0000313|EMBL:EAR21085.1}; EC=2.7.7.4 {ECO:0000313|EMBL:EAR21085.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein (EC:2.7.7.4)
adenylylsulfate kinase Tax=Arhodomonas aquaeolei RepID=UPI00037117E1
PLM3_60_coex_sep16_scaffold_401_20
unknown

Not on your lists

comp(16003..16116)
DNA (114bp) protein (38aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_401_21
Nitrosomonas sp. AL212, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16558..19806
DNA (3249bp) protein (1083aa)
TonB-dependent receptor Tax=Nitrosomonas sp. AL212 RepID=F9ZK03_9PROT
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ADZ27663.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. AL212.;"
PLM3_60_coex_sep16_scaffold_401_22
unknown

Not on your lists

19846..20739
DNA (894bp) protein (298aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_401_23
unknown

Not on your lists

20772..21377
DNA (606bp) protein (202aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_401_24
unknown

Not on your lists

21395..21793
DNA (399bp) protein (133aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_401_25
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22219..24510
DNA (2292bp) protein (764aa)
hypothetical protein Tax=Methylosarcina fibrata RepID=UPI00037A609A
Uncharacterized protein {ECO:0000313|EMBL:KJB93388.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
adenylate/guanylate cyclase with Chase sensor
PLM3_60_coex_sep16_scaffold_401_26
Roseivivax atlanticus, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24636..25595)
DNA (960bp) protein (320aa)
hypothetical protein Tax=Afipia birgiae RepID=UPI0002ECA009
Putative calcium-binding protein {ECO:0000313|EMBL:ETW11363.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax atlanticus.;"
hypothetical protein
Displaying 26 items

View Taxonomy