ggKbase home page

PLM3_60_coex_sep16_scaffold_937

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_937_1
unknown

Not on your lists

comp(315..515)
DNA (201bp) protein (67aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_937_2
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(689..2524)
DNA (1836bp) protein (612aa)
NolN protein Tax=Bradyrhizobium japonicum RepID=UPI000363B9E8
Carbamoyltransferase
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
PLM3_60_coex_sep16_scaffold_937_3
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2537..2689)
DNA (153bp) protein (51aa)
Uncharacterized protein Tax=Magnetospirillum RepID=M2YBX0_9PROT
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAE48838.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
PLM3_60_coex_sep16_scaffold_937_4
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2698..2979)
DNA (282bp) protein (94aa)
Uncharacterized protein Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F5G4_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
PLM3_60_coex_sep16_scaffold_937_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

3339..4337
DNA (999bp) protein (333aa)
Putative uncharacterized protein Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VVS0_DYAFD
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM3_60_coex_sep16_scaffold_937_6
Nostoc sp. PCC 7107, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(4458..5279)
DNA (822bp) protein (274aa)
Putative polysaccharide pyruvyl transferase Tax=Nostoc sp. PCC 7107 RepID=K9QF49_9NOSO
putative polysaccharide pyruvyl transferase
Putative polysaccharide pyruvyl transferase {ECO:0000313|EMBL:AFY43978.1}; species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. PCC 7107.;"
PLM3_60_coex_sep16_scaffold_937_7
Sagittula stellata, Sagittula, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5937..6125)
DNA (189bp) protein (63aa)
Transposase Tax=Sagittula stellata E-37 RepID=A3K011_9RHOB
Transposase {ECO:0000313|EMBL:EBA07906.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sagittula.;" source="Sagittula stellata E-37.;"
integrase catalytic subunit
PLM3_60_coex_sep16_scaffold_937_8
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6432..7469)
DNA (1038bp) protein (346aa)
Putative Glycosyltransferase involved in cell wall biogenesis Tax=Vibrio nigripulchritudo SOn1 RepID=U4JAJ5_9VIBR
putative Glycosyltransferase involved in cell wall biogenesis
Tax=BJP_IG2103_Dechloromonas_63_51
PLM3_60_coex_sep16_scaffold_937_9
Pelosinus sp. UFO1, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

8138..11707
DNA (3570bp) protein (1190aa)
Ca2+-binding protein, RTX toxin Tax=Herbaspirillum sp. YR522 RepID=J2WC77_9BURK
Hemolysin-type calcium binding domain protein
Hemolysin-type calcium binding domain protein {ECO:0000313|EMBL:AIF49638.1}; species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus sp. UFO1.;"
PLM3_60_coex_sep16_scaffold_937_10
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12055..13776)
DNA (1722bp) protein (574aa)
UPI0003CFC54F related cluster Tax=unknown RepID=UPI0003CFC54F
Adenylate cyclase {ECO:0000313|EMBL:ESZ21724.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
adenylate class-3/4/guanylyl cyclase
PLM3_60_coex_sep16_scaffold_937_11
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

14109..15533
DNA (1425bp) protein (475aa)
hypothetical protein Tax=Bradyrhizobium japonicum RepID=UPI00036B4726
FAD linked oxidase-like protein
Tax=RBG_16_Actinobacteria_68_12_curated
PLM3_60_coex_sep16_scaffold_937_12
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16195..16806)
DNA (612bp) protein (204aa)
Glutathione S-transferase domain protein Tax=Calothrix sp. PCC 7507 RepID=K9PCE5_9CYAN
glutathione S-transferase
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3_60_coex_sep16_scaffold_937_13
unknown

Not on your lists

16816..17064
DNA (249bp) protein (83aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_937_14
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17154..20498)
DNA (3345bp) protein (1115aa)
hypothetical protein Tax=Rhizobium giardinii RepID=UPI00037AB039
Adenylate/guanylate cyclase {ECO:0000313|EMBL:KEC78431.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
adenylate/guanylate cyclase
PLM3_60_coex_sep16_scaffold_937_15
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20823..21386)
DNA (564bp) protein (188aa)
Uncharacterized protein Tax=Sorangium cellulosum So0157-2 RepID=S4XKT2_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP33164.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
PLM3_60_coex_sep16_scaffold_937_16
Ruegeria sp. ANG-S4, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22263..23144
DNA (882bp) protein (294aa)
hypothetical protein Tax=Ruegeria conchae RepID=UPI000237B536
Uncharacterized protein {ECO:0000313|EMBL:KIC43992.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria sp. ANG-S4.;"
PLM3_60_coex_sep16_scaffold_937_17
Amycolatopsis decaplanina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23407..23856)
DNA (450bp) protein (150aa)
AviX4 Tax=Amycolatopsis decaplanina DSM 44594 RepID=M2ZWM2_9PSEU
AviX4 {ECO:0000313|EMBL:EME65108.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis decaplanina DSM 44594.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_937_18
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23995..24693
DNA (699bp) protein (233aa)
cAMP-binding protein Tax=Magnetospirillum sp. SO-1 RepID=M2Z1W3_9PROT
cAMP-binding protein {ECO:0000313|EMBL:EME68290.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase
PLM3_60_coex_sep16_scaffold_937_19
Phaeospirillum fulvum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24712..27810)
DNA (3099bp) protein (1033aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015000}; EC=2.7.7.42 {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015004};; Glutamine-synthase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; [Glutamate--ammonia-ligase] adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum fulvum MGU-K5.;"
glutamate-ammonia-ligase adenylyltransferase (EC:2.7.7.42)
glutamine-synthetase adenylyltransferase Tax=Fodinicurvata sediminis RepID=UPI0003B6B8B6
PLM3_60_coex_sep16_scaffold_937_20
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28273..28623
DNA (351bp) protein (117aa)
UPI0003D04D65 related cluster Tax=unknown RepID=UPI0003D04D65
Uncharacterized protein {ECO:0000313|EMBL:ESZ21578.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
DGPFAETKE domain-containing protein
PLM3_60_coex_sep16_scaffold_937_21
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28655..30070
DNA (1416bp) protein (472aa)
RNA polymerase sigma factor, sigma-70 family (Fragment) Tax=Caulobacter sp. AP07 RepID=J2GDT0_9CAUL
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EJL28035.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
RNA polymerase sigma-70 factor, ECF subfamily
PLM3_60_coex_sep16_scaffold_937_22
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30039..31547
DNA (1509bp) protein (503aa)
regulatory protein Tax=Rhizobium mongolense RepID=UPI0003B7280C
Uncharacterized protein {ECO:0000313|EMBL:KJC53818.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
Putative regulatory protein,possibly two-component response regulator
PLM3_60_coex_sep16_scaffold_937_23
unknown

Not on your lists

comp(31918..32448)
DNA (531bp) protein (177aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_937_24
unknown

Not on your lists

comp(32556..33110)
DNA (555bp) protein (185aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_937_25
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33286..33441)
DNA (156bp) protein (52aa)
Uncharacterized protein Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D8Z2_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL07669.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
Displaying 25 items

View Taxonomy