ggKbase home page

PLM3_60_coex_sep16_scaffold_938

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_938_1
unknown

Not on your lists

comp(3..77)
DNA (75bp) protein (25aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_938_2
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

358..1113
DNA (756bp) protein (252aa)
ABC transporter related protein Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I1V1_RHOVT
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADP70170.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
PLM3_60_coex_sep16_scaffold_938_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1106..1855
DNA (750bp) protein (250aa)
Uncharacterized protein Tax=Afipia broomeae ATCC 49717 RepID=K8PFL6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39549.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ABC transporter-like protein
PLM3_60_coex_sep16_scaffold_938_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1879..3090
DNA (1212bp) protein (404aa)
ABC transporter permease Tax=Chelatococcus sp. GW1 RepID=UPI000305C02F
ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM3_60_coex_sep16_scaffold_938_5
bacterium YEK0313, Bacteria

Not on your lists

3143..4030
DNA (888bp) protein (296aa)
ABC transporter permease Tax=Chelatococcus sp. GW1 RepID=UPI0003701C0D
High-affinity branched-chain amino acid transport system permease protein LivH {ECO:0000313|EMBL:CEJ15315.1}; species="Bacteria.;" source="bacterium YEK0313.;"
branched chain amino acid ABC transporter permease
PLM3_60_coex_sep16_scaffold_938_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

4032..5012
DNA (981bp) protein (327aa)
Branched-chain amino acid ABC transporter, permease protein bin=GWF2_Methylomirabilis_70_14 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
inner-membrane translocator
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_60_coex_sep16_scaffold_938_7
Endozoicomonas numazuensis, Endozoicomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5235..5903)
DNA (669bp) protein (223aa)
Uncharacterized protein Tax=Thalassospira profundimaris WP0211 RepID=K2LJS9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KEQ18089.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Endozoicomonas.;" source="Endozoicomonas numazuensis.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_938_8
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(5887..7164)
DNA (1278bp) protein (426aa)
hypothetical protein Tax=Hahella ganghwensis RepID=UPI000376F8F3
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
PLM3_60_coex_sep16_scaffold_938_9
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7518..9053)
DNA (1536bp) protein (512aa)
Phage/plasmid primase P4 family protein Tax=Oceanibaculum indicum P24 RepID=K2JU73_9PROT
Phage/plasmid primase P4 family protein {ECO:0000313|EMBL:EKE68705.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
phage/plasmid primase P4 family
PLM3_60_coex_sep16_scaffold_938_10
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9050..10099)
DNA (1050bp) protein (350aa)
Putative DNA primase Tax=Phaeospirillum molischianum DSM 120 RepID=H8FUY0_PHAMO
Putative DNA primase {ECO:0000313|EMBL:CCG42168.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
virulence-associated protein E
PLM3_60_coex_sep16_scaffold_938_11
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10111..10569)
DNA (459bp) protein (153aa)
Putative bacteriophage-related protein Tax=alpha proteobacterium BAL199 RepID=A8TY18_9PROT
Putative bacteriophage-related protein {ECO:0000313|EMBL:EDP62654.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
phage-like protein
PLM3_60_coex_sep16_scaffold_938_12
Desulfarculus baarsii, Desulfarculus, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10566..12137)
DNA (1572bp) protein (524aa)
resolvase Tax=Desulfovibrio longus RepID=UPI0003B54681
resolvase
Resolvase domain protein {ECO:0000313|EMBL:ADK85209.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfarculales; Desulfarculaceae; Desulfarculus.;" source="Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 /; 2st14).;"
PLM3_60_coex_sep16_scaffold_938_13
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12134..12610)
DNA (477bp) protein (159aa)
Uncharacterized protein Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F740_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDL00288.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
PLM3_60_coex_sep16_scaffold_938_14
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14202..15095)
DNA (894bp) protein (298aa)
Transcriptional regulator Tax=Novosphingobium sp. AP12 RepID=J2H950_9SPHN
LysR family transcriptional regulator {ECO:0000313|EMBL:KJC60279.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
LysR family transcriptional regulator
PLM3_60_coex_sep16_scaffold_938_15
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15264..15743
DNA (480bp) protein (160aa)
UPI0003CFD222 related cluster Tax=unknown RepID=UPI0003CFD222
(2Fe-2S)-binding domain-containing protein {ECO:0000313|EMBL:EJZ30255.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
(2Fe-2S)-binding domain protein
PLM3_60_coex_sep16_scaffold_938_16
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15746..16693
DNA (948bp) protein (316aa)
isoquinoline 1-oxidoreductase beta subunit (EC:1.3.99.16)
Isoquinoline 1-oxidoreductase beta subunit {ECO:0000313|EMBL:BAQ16616.1}; EC=1.3.99.16 {ECO:0000313|EMBL:BAQ16616.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
Tat (Twin-arginine translocation) pathway signal sequence Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IQZ9_9BRAD
Displaying 16 items

View Taxonomy