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PLM3_60_coex_sep16_scaffold_18

Search features with annotation key words

Displaying items 1-30 of 112 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_18_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(1..453)
DNA (453bp) protein (151aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
ATP-binding region ATPase domain protein
PLM3_60_coex_sep16_scaffold_18_2
Microcoleus vaginatus, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

596..2896
DNA (2301bp) protein (767aa)
sensory transduction protein kinase (EC:2.7.3.-)
Multi-sensor hybrid histidine kinase Tax=Microcoleus vaginatus FGP-2 PF4_9CYAN">RepID=F5UPF4_9CYAN
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:EGK83756.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus vaginatus FGP-2.;"
PLM3_60_coex_sep16_scaffold_18_3
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

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2953..3801
DNA (849bp) protein (283aa)
Trehalose/maltose transglucosylase and maltokinase, putative Tax=Bacteria RepID=B5E930_GEOBB
trehalose synthase
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
PLM3_60_coex_sep16_scaffold_18_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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3808..6774
DNA (2967bp) protein (989aa)
malto-oligosyltrehalose synthase (EC:5.4.99.15)
Maltooligosyl trehalose synthase Tax=Anaeromyxobacter RepID=Q2IMN4_ANADE bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_18_5

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7012..7566
DNA (555bp) protein (185aa)
Uncharacterized protein Tax=uncultured bacterium A1Q1_fos_517 RepID=L7VW32_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AGC71551.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_517.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_18_6
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7683..9569
DNA (1887bp) protein (629aa)
Malto-oligosyltrehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; Short=MTHase {ECO:0000256|PIRNR:PIRNR006337};; EC=3.2.1.141 {ECO:0000256|PIRNR:PIRNR006337};; 4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; Maltooligosyl trehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus str. Maddingley MBC34.;"
Malto-oligosyltrehalose trehalohydrolase Tax=Desulfovibrio magneticus str. Maddingley MBC34 RepID=K6GLF8_9DELT
treZ; malto-oligosyltrehalose trehalohydrolase
PLM3_60_coex_sep16_scaffold_18_7
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

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9562..11694
DNA (2133bp) protein (711aa)
Glycogen debranching enzyme Tax=Chthoniobacter flavus Ellin428 RepID=B4D2U4_9BACT
glycogen debranching protein
Tax=GWC2_Nitrospirae_57_9_curated
PLM3_60_coex_sep16_scaffold_18_8
Deinococcus phoenicis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

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11697..12338
DNA (642bp) protein (214aa)
Uncharacterized protein Tax=Deinococcus geothermalis (strain DSM 11300) RepID=Q1IYD0_DEIGD
Uncharacterized protein {ECO:0000313|EMBL:EYB68526.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus phoenicis.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_18_9
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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12509..13273
DNA (765bp) protein (255aa)
hypothetical protein Tax=Roseomonas sp. B5 RepID=UPI0002E14B8B
ribonuclease BN
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM3_60_coex_sep16_scaffold_18_10

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13380..13589
DNA (210bp) protein (70aa)
hypothetical protein bin=CNBR_ACIDO species=Hydrocarboniphaga effusa genus=Hydrocarboniphaga taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48358.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_18_11
Deinococcus geothermalis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

13628..14824
DNA (1197bp) protein (399aa)
Glycine/D-amino acid oxidase Tax=Deinococcus geothermalis (strain DSM 11300) RepID=Q1J1X1_DEIGD
FAD dependent oxidoreductase
Glycine/D-amino acid oxidase {ECO:0000313|EMBL:ABF44513.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus geothermalis (strain DSM 11300).;"
PLM3_60_coex_sep16_scaffold_18_12
R_Acidobacteria_68_18, Acidobacteria, Bacteria

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comp(14838..15530)
DNA (693bp) protein (231aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3_60_coex_sep16_scaffold_18_13
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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15644..16474
DNA (831bp) protein (277aa)
hypothetical protein Tax=Sphingobium sp. YL23 RepID=UPI00039ED7EC
Uncharacterized protein {ECO:0000313|EMBL:AJR25792.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_18_14
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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16592..16873
DNA (282bp) protein (94aa)
hypothetical protein Tax=Singularimonas variicoloris RepID=UPI000368E390
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3_60_coex_sep16_scaffold_18_15
unknown

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comp(17185..17448)
DNA (264bp) protein (88aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_18_16
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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17464..18729
DNA (1266bp) protein (422aa)
hypothetical protein Tax=Azoarcus toluclasticus RepID=UPI0003633D49
Lipoprotein {ECO:0000313|EMBL:AKH39570.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas communis.;"
cytochrome c class I
PLM3_60_coex_sep16_scaffold_18_17
RLO_PLX_64_10, Bacteria

Not on your lists

comp(18726..19673)
DNA (948bp) protein (316aa)
Demethylmenaquinone methyltransferase-like protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021Q8_SOLUE
demethylmenaquinone methyltransferase-like protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3_60_coex_sep16_scaffold_18_18
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(19690..21090)
DNA (1401bp) protein (467aa)
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021Q9_SOLUE
mandelate racemase
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein {ECO:0000313|EMBL:ABJ84316.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM3_60_coex_sep16_scaffold_18_19
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(21220..24639)
DNA (3420bp) protein (1140aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037FADEB
CnaB domain-containing protein
Cna B domain protein {ECO:0000313|EMBL:ABJ87695.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM3_60_coex_sep16_scaffold_18_20
Cyanothece sp. PCC 7425, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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24787..26130
DNA (1344bp) protein (448aa)
Major facilitator superfamily MFS_1 Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HRK8_CYAP4
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACL45875.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 7425 / ATCC 29141).;"
PLM3_60_coex_sep16_scaffold_18_21
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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26152..27099
DNA (948bp) protein (316aa)
Xylose isomerase domain-containing protein TIM barrel Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EMR7_RUNSL
xylose isomerase domain-containing protein
Xylose isomerase domain-containing protein TIM barrel {ECO:0000313|EMBL:AEI51300.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
PLM3_60_coex_sep16_scaffold_18_22
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27301..28014
DNA (714bp) protein (238aa)
hypothetical protein Tax=Hymenobacter aerophilus RepID=UPI000362428A
Uncharacterized protein {ECO:0000313|EMBL:KFC68146.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_18_23
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28106..29047
DNA (942bp) protein (314aa)
ribonuclease BN; K07058 membrane protein bin=CNBR_ACIDO species=Pseudomonas stutzeri genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ribonuclease BN
Ribonuclease BN family protein {ECO:0000313|EMBL:ACM20951.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32).;"
PLM3_60_coex_sep16_scaffold_18_24
R_Acidobacteria_60_20, Acidobacteria, Bacteria

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29314..29472
DNA (159bp) protein (53aa)
Serine/threonine protein kinase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01TY9_SOLUE
serine/threonine protein kinase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
PLM3_60_coex_sep16_scaffold_18_25
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

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comp(29724..31232)
DNA (1509bp) protein (503aa)
arylsulfatase Tax=Verrucomicrobium spinosum RepID=UPI0001744E9E
Cerebroside-sulfatase
Tax=RBG_16_Planctomycetes_55_9_curated
PLM3_60_coex_sep16_scaffold_18_26

Not on your lists

comp(31261..31500)
DNA (240bp) protein (80aa)
putative acetyl xylan esterase bin=CNBR_ACIDO species=Alistipes sp. JC136 genus=Alistipes taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Marine sediment metagenome DNA, contig: S12H4_S25364 {ECO:0000313|EMBL:GAJ22501.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
acetyl xylan esterase
PLM3_60_coex_sep16_scaffold_18_27
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(31501..32466)
DNA (966bp) protein (322aa)
putative acetyl xylan esterase bin=CNBR_ACIDO species=Alistipes sp. JC136 genus=Alistipes taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
putative acetyl xylan esterase
Putative acetyl xylan esterase {ECO:0000313|EMBL:ACT94248.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
PLM3_60_coex_sep16_scaffold_18_28
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

comp(32509..34371)
DNA (1863bp) protein (621aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003798FA1
hypothetical protein
Tax=CG_Arma_02
PLM3_60_coex_sep16_scaffold_18_29
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

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comp(34655..37342)
DNA (2688bp) protein (896aa)
Macrolide transporter ATP-binding /permease protein Tax=Gloeobacter kilaueensis JS1 RepID=U5QSA7_9CYAN
macrolide transporter ATP-binding/permease protein
Macrolide transporter ATP-binding /permease protein {ECO:0000313|EMBL:AGY60600.1}; species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
PLM3_60_coex_sep16_scaffold_18_30
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(37339..37707)
DNA (369bp) protein (123aa)
Gll1202 protein Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NLC4_GLOVI
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
Displaying items 1-30 of 112 in total

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