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PLM3_60_coex_sep16_scaffold_125

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_125_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

1..1128
DNA (1128bp) protein (376aa)
hypothetical protein Tax=Aminicenantes bacterium SCGC AAA255-E10 RepID=UPI000382B3A2
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3_60_coex_sep16_scaffold_125_2
unknown

Not on your lists

1216..1659
DNA (444bp) protein (148aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_125_3
unknown

Not on your lists

1739..2101
DNA (363bp) protein (121aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_125_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

2273..2800
DNA (528bp) protein (176aa)
NUDIX hydrolase (Modular protein) bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
NUDIX hydrolase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_125_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

2963..3412
DNA (450bp) protein (150aa)
MUC5AC, MUC5B, mucin-5B; mucin-5AC; K13908 mucin-5B bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Mammalia phylum=Chordata tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_125_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(3522..4529)
DNA (1008bp) protein (336aa)
Tagatose-bisphosphate aldolase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IR86_KORVE
tagatose 1,6-diphosphate aldolase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_125_7
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(4764..5933)
DNA (1170bp) protein (390aa)
thiI; thiamine biosynthesis protein thiI bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
putative thiamine biosynthesis protein ThiI
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_125_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(6005..7354)
DNA (1350bp) protein (450aa)
squalene-associated FAD-dependent desaturase (EC:1.14.99.30) bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
squalene-associated FAD-dependent desaturase (EC:1.14.99.30)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_125_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(7351..8223)
DNA (873bp) protein (291aa)
squalene/phytoene synthase bin=CNBR_ACIDO species=Thauera linaloolentis genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
squalene/phytoene synthase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_125_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(8238..9122)
DNA (885bp) protein (295aa)
squalene synthase (EC:2.5.1.32) bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
crtB1; phytoene synthase (EC:2.5.1.32)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_125_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(9119..9658)
DNA (540bp) protein (180aa)
ATP/cobalamin adenosyltransferase bin=CNBR_ACIDO species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_125_12
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

9890..10444
DNA (555bp) protein (185aa)
mutY; A/G-specific adenine glycosylase (EC:3.2.2.-); K03575 A/G-specific adenine glycosylase [EC:3.2.2.-] bin=CNBR_ACIDO species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
mutY; A/G-specific adenine glycosylase (EC:3.2.2.-)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3_60_coex_sep16_scaffold_125_13
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

10444..10851
DNA (408bp) protein (136aa)
mutT; mutator protein MutT (EC:3.6.1.-); K03574 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
mutT; mutator protein MutT (EC:3.6.1.-)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_125_14
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(10892..11980)
DNA (1089bp) protein (363aa)
putative aminomethyltransferase (EC:2.1.2.10); K00605 aminomethyltransferase [EC:2.1.2.10] bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin1_lowGC organism_group=Unknown_CP
glycine cleavage system t protein (EC:2.1.2.10)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_125_15
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

12007..13770
DNA (1764bp) protein (588aa)
lipoprotein; K06889 bin=CNBR_ACIDO species=Asticcacaulis sp. AC466 genus=Asticcacaulis taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_125_16
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

13796..14941
DNA (1146bp) protein (382aa)
Alanine dehydrogenase/PNT domain protein bin=GWC2_Proteo_65_14_Ab886 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
NAD(P) transhydrogenase subunit alpha
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_125_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

14958..15254
DNA (297bp) protein (99aa)
ABC transporter ATP-binding protein bin=CNBR_ACIDO species=Nocardia farcinica genus=Nocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
multidrug ABC transporter ATPase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_125_18
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(15294..16862)
DNA (1569bp) protein (523aa)
Thiol oxidoreductase-like protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IKQ6_KORVE
thiol oxidoreductase-like
Thiol oxidoreductase-like protein {ECO:0000313|EMBL:ABF42544.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PLM3_60_coex_sep16_scaffold_125_19
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

16957..17721
DNA (765bp) protein (255aa)
Uncharacterized protein Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8X5Y7_ACISM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADW70871.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella tundricola (strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9).;"
PLM3_60_coex_sep16_scaffold_125_20
unknown

Not on your lists

17711..18628
DNA (918bp) protein (306aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_125_21
Oscillatoria acuminata, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

18716..21922
DNA (3207bp) protein (1069aa)
Uncharacterized protein Tax=Oscillatoria acuminata PCC 6304 RepID=K9TK07_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY82738.1}; Flags: Precursor;; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoria.;" source="Oscillatoria acuminata PCC 6304.;"
PLM3_60_coex_sep16_scaffold_125_22
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(22111..23268)
DNA (1158bp) protein (386aa)
Uncharacterized protein Tax=Desulfovibrio alkalitolerans DSM 16529 RepID=S7UFR0_9DELT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_125_23
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(23323..23745)
DNA (423bp) protein (141aa)
TadE family protein Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R1M9_PIRSD
TadE family protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_125_24
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(24207..24848)
DNA (642bp) protein (214aa)
beta-lactamase bin=CNBR_ACIDO species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
beta-lactamase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_125_25
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

24898..25647
DNA (750bp) protein (250aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q020U6_SOLUE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_125_26
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

25644..26009
DNA (366bp) protein (122aa)
Response regulator receiver protein Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ASE4_RUBXD
Response regulator receiver domain
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_125_27
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

26186..26956
DNA (771bp) protein (257aa)
Putative threonine dehydratase catabolic Tax=Thermotoga sp. (strain RQ2) RepID=Q7WU60_THESQ
threonine dehydratase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_125_28
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(27130..28095)
DNA (966bp) protein (322aa)
Serine/threonine protein kinase with TPR repeats Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IP04_KORVE
serine/threonin protein kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_125_29
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(28115..28768)
DNA (654bp) protein (218aa)
Short-chain dehydrogenase/reductase SDR Tax=Solibacter usitatus (strain Ellin6076) RepID=Q023X9_SOLUE bin=16ft_combo_ws3_JS1 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
short chain dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_60_coex_sep16_scaffold_125_30
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

28875..29747
DNA (873bp) protein (291aa)
malate dehydrogenase (EC:1.1.1.37); K00024 malate dehydrogenase [EC:1.1.1.37] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
malate dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
Displaying items 1-30 of 63 in total

View Taxonomy