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PLM3_60_coex_sep16_scaffold_3309

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_3309_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..305)
DNA (303bp) protein (101aa)
hypothetical protein GobsU_20598 bin=GWD2_Deltaproteobacteria_55_8 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
OmpA/MotB domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_60_coex_sep16_scaffold_3309_2
unknown

Not on your lists

comp(342..713)
DNA (372bp) protein (124aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3309_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(742..1137)
DNA (396bp) protein (132aa)
Uncharacterized protein Tax=Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) RepID=E6W762_DESIS
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_60_coex_sep16_scaffold_3309_4
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1182..1811)
DNA (630bp) protein (210aa)
Uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3_60_coex_sep16_scaffold_3309_5
unknown

Not on your lists

comp(1834..2049)
DNA (216bp) protein (72aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3309_6
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2097..2432)
DNA (336bp) protein (112aa)
hypothetical protein GobsU_20598 bin=GWD2_Deltaproteobacteria_55_8 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
outer membrane protein/peptidoglycan-associated (lipo)protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3_60_coex_sep16_scaffold_3309_7
unknown

Not on your lists

2705..3070
DNA (366bp) protein (122aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3309_8
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2930..3268)
DNA (339bp) protein (113aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3_60_coex_sep16_scaffold_3309_9
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3306..3662)
DNA (357bp) protein (119aa)
hypothetical protein GobsU_20598 bin=GWD2_Deltaproteobacteria_55_8 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
OmpA/MotB domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_60_coex_sep16_scaffold_3309_10
unknown

Not on your lists

comp(3688..3987)
DNA (300bp) protein (100aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3309_11
unknown

Not on your lists

comp(3999..4205)
DNA (207bp) protein (69aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3309_12
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4517..5872)
DNA (1356bp) protein (452aa)
acetoacetate metabolism regulatory protein AtoC Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00036C7B55
response regulator in two-component regulatory system, sigma 54-dependent
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_60_coex_sep16_scaffold_3309_13
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5873..7453)
DNA (1581bp) protein (527aa)
Two-component sensor histidine kinase Tax=Azospirillum sp. (strain B510) RepID=D3P1N9_AZOS1
two-component sensor histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_60_coex_sep16_scaffold_3309_14
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7484..8530
DNA (1047bp) protein (349aa)
Cyclic pyranopterin monophosphate synthase Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C130_NITHN
molybdenum cofactor biosynthesis protein A
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_60_coex_sep16_scaffold_3309_15
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8556..8834)
DNA (279bp) protein (93aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_60_coex_sep16_scaffold_3309_16
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8973..9716
DNA (744bp) protein (248aa)
dehydrogenase Tax=Janthinobacterium sp. CG3 RepID=UPI00034A6511
short-chain dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_60_coex_sep16_scaffold_3309_17

Not on your lists

9733..10500
DNA (768bp) protein (256aa)
seg 4..14 bin=ACD20 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=ACD20 organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
Uncharacterized protein {ECO:0000313|EMBL:EKE04470.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
PLM3_60_coex_sep16_scaffold_3309_18
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10544..11752
DNA (1209bp) protein (403aa)
Major facilitator superfamily MFS_1 bin=GWC2_Nitrospirae-rel_56_14 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
major facilitator transporter
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3_60_coex_sep16_scaffold_3309_19
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11837..12055)
DNA (219bp) protein (73aa)
id=1975835 bin=GWD2_Desulfuromonadales_54_10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
Tax=GWD2_Desulfuromonadales_54_10_curated
PLM3_60_coex_sep16_scaffold_3309_20
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(12108..12326)
DNA (219bp) protein (73aa)
Putative uncharacterized protein Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WN11_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3_60_coex_sep16_scaffold_3309_21
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

12451..12774
DNA (324bp) protein (108aa)
Chromate transporter, chromate ion transporter (CHR) family bin=GWF2_Methylomirabilis_70_14 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative transporter
Tax=GWA2_Rokubacteria_70_23_curated
Displaying 21 items

View Taxonomy