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PLM3_60_coex_sep16_scaffold_3356

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_3356_1
RBG_13_Actinobacteria_55_18_curated, Actinobacteria, Bacteria

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comp(3..272)
DNA (270bp) protein (90aa)
Putative transcriptional regulator Tax=Nocardia farcinica (strain IFM 10152) RepID=Q5YUX7_NOCFA
transcriptional regulator
Tax=RBG_13_Actinobacteria_55_18_curated
PLM3_60_coex_sep16_scaffold_3356_2
RBG_16_KB1_OP1_55_9_curated, KB1, Bacteria

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437..1183
DNA (747bp) protein (249aa)
hypothetical protein Tax=Paenibacillus ginsengihumi RepID=UPI0003604CC5
transcriptional regulator
Tax=RBG_16_KB1_OP1_55_9_curated
PLM3_60_coex_sep16_scaffold_3356_3
Candidatus Desulforudis audaxviator, Candidatus Desulforudis, Clostridiales, Clostridia, Firmicutes, Bacteria

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1189..2376
DNA (1188bp) protein (396aa)
hypothetical protein Tax=Nocardiopsis chromatogenes RepID=UPI000348C9DF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA59796.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Candidatus Desulforudis.;" source="Desulforudis audaxviator (strain MP104C).;"
PLM3_60_coex_sep16_scaffold_3356_4
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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2373..4031
DNA (1659bp) protein (553aa)
Uncharacterized protein Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C820_SPHTD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ39963.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM3_60_coex_sep16_scaffold_3356_5
Streptomyces ambofaciens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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4166..6214
DNA (2049bp) protein (683aa)
short-chain dehydrogenase Tax=Streptomyces sp. CNQ766 RepID=UPI000372D6B4
Putative oxidoreductase {ECO:0000313|EMBL:CAJ89899.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces ambofaciens ATCC 23877.;"
rhaD; rhamnulose-1-phosphate aldolase
PLM3_60_coex_sep16_scaffold_3356_6
Streptomyces zinciresistens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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6978..7580
DNA (603bp) protein (201aa)
carbohydrate kinase, partial Tax=Curtobacterium sp. B18 RepID=UPI0003B3DD10
Rhamnose kinase {ECO:0000313|EMBL:EGX56306.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces zinciresistens K42.;"
carbohydrate kinase
PLM3_60_coex_sep16_scaffold_3356_7
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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7737..8378
DNA (642bp) protein (214aa)
hypothetical protein Tax=Frankia sp. BCU110501 RepID=UPI0003740639
DeoR family transcriptional regulator
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:ABW14041.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM3_60_coex_sep16_scaffold_3356_8
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

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comp(8454..9533)
DNA (1080bp) protein (360aa)
Putative ABC transporter substrate binding protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I9W2_CALAS
putative ABC transporter substrate binding protein
Putative ABC transporter substrate binding protein {ECO:0000313|EMBL:BAM02050.1}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
PLM3_60_coex_sep16_scaffold_3356_9
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(9694..10752)
DNA (1059bp) protein (353aa)
monosaccharide-transporting ATPase (EC:3.6.3.17)
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:ACL26160.1}; EC=3.6.3.17 {ECO:0000313|EMBL:ACL26160.1};; Flags: Precursor;; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aggregans (strain MD-66 / DSM 9485).;"
Monosaccharide-transporting ATPase Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G8A6_CHLAD
PLM3_60_coex_sep16_scaffold_3356_10
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(10745..11842)
DNA (1098bp) protein (366aa)
monosaccharide-transporting ATPase (EC:3.6.3.17)
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:ABY35497.1}; EC=3.6.3.17 {ECO:0000313|EMBL:ABY35497.1};; Flags: Precursor;; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl).;"
Monosaccharide-transporting ATPase Tax=Chloroflexus RepID=A9WGG5_CHLAA
PLM3_60_coex_sep16_scaffold_3356_11
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(11839..13305)
DNA (1467bp) protein (489aa)
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
ABC transporter related Tax=Roseiflexus sp. (strain RS-1) RepID=A5UWU5_ROSS1
ABC transporter-like protein
PLM3_60_coex_sep16_scaffold_3356_12
Streptomyces collinus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(13520..14875)
DNA (1356bp) protein (452aa)
Pup--protein ligase {ECO:0000256|HAMAP-Rule:MF_02111, ECO:0000256|SAAS:SAAS00018320}; EC=6.3.2.n2 {ECO:0000256|HAMAP-Rule:MF_02111, ECO:0000256|SAAS:SAAS00018320};; Proteasome accessory factor A {ECO:0000256|HAMAP-Rule:MF_02111}; Pup-conjugating enzyme {ECO:0000256|HAMAP-Rule:MF_02111}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces collinus Tu 365.;"
Pup--protein ligase Tax=Streptomyces collinus Tu 365 RepID=S5VDC2_STRCU
proteasome component
PLM3_60_coex_sep16_scaffold_3356_13
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(14955..15611)
DNA (657bp) protein (219aa)
Glycoside hydrolase 15-related Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ATD7_RUBXD
glycoside hydrolase 15-like protein
Glycoside hydrolase 15-related {ECO:0000313|EMBL:ABG05341.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3_60_coex_sep16_scaffold_3356_14
Thermobaculum terrenum, Thermobaculum, Bacteria

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comp(16349..17665)
DNA (1317bp) protein (439aa)
Uncharacterized protein Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CHT6_THET1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ43307.1}; Flags: Precursor;; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
PLM3_60_coex_sep16_scaffold_3356_15
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(17985..18737)
DNA (753bp) protein (251aa)
Proteasome subunit alpha {ECO:0000256|HAMAP-Rule:MF_00289}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_00289};; 20S proteasome alpha subunit {ECO:0000256|HAMAP-Rule:MF_00289}; Proteasome core protein PrcA {ECO:0000256|HAMAP-Rule:MF_00289}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
prcA; 20S proteasome subunit alpha (EC:3.4.25.1)
proteasome subunit alpha Tax=Frankia sp. Iso899 RepID=UPI0003B3B66F
PLM3_60_coex_sep16_scaffold_3356_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(18744..19535)
DNA (792bp) protein (264aa)
psmB; proteasome subunit beta (EC:3.4.25.1)
Putative proteasome A-type and B-type bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_60_coex_sep16_scaffold_3356_17
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(19654..19866)
DNA (213bp) protein (71aa)
Prokaryotic ubiquitin-like protein Pup Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8AZM4_FRADG
ubiquitin-like protein pup
Ubiquitin-like protein pup {ECO:0000313|EMBL:AEH09627.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
PLM3_60_coex_sep16_scaffold_3356_18
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(19947..21431)
DNA (1485bp) protein (495aa)
Uncharacterized protein Tax=Frankia sp. (strain EuI1c) RepID=E3J2U9_FRASU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADP81760.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
PLM3_60_coex_sep16_scaffold_3356_19
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21543..23327)
DNA (1785bp) protein (595aa)
ATPase AAA Tax=Streptomyces vitaminophilus RepID=UPI00035EEA0A
Proteasome-associated ATPase {ECO:0000256|SAAS:SAAS00216588}; AAA ATPase forming ring-shaped complexes {ECO:0000256|SAAS:SAAS00017598}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
AAA ATPase
PLM3_60_coex_sep16_scaffold_3356_20
Kocuria rhizophila, Kocuria, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(23629..23844)
DNA (216bp) protein (72aa)
SAM-dependent methyltransferase Tax=Kocuria rhizophila RepID=UPI000306267F
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAG29736.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Kocuria.;" source="Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 /; DC2201).;"
Displaying 20 items

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