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PLM3_60_coex_sep16_scaffold_3522

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_3522_1
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(2..604)
DNA (603bp) protein (201aa)
GTPase Obg Tax=Frankia sp. QA3 RepID=I8QTN1_9ACTO
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
obgE; GTPase ObgE
PLM3_60_coex_sep16_scaffold_3522_2
Mycobacterium gastri, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(655..915)
DNA (261bp) protein (87aa)
50S ribosomal protein L27 Tax=Mycobacterium kansasii ATCC 12478 RepID=U5WKT4_MYCKA
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium gastri 'Wayne'.;"
rpmA; 50S ribosomal protein L27
PLM3_60_coex_sep16_scaffold_3522_3
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(917..1279)
DNA (363bp) protein (121aa)
50S ribosomal protein L21 Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XNZ0_MICPN
rplU; 50S ribosomal protein L21
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
PLM3_60_coex_sep16_scaffold_3522_4
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(1485..3626)
DNA (2142bp) protein (714aa)
hypothetical protein Tax=Nocardiopsis potens RepID=UPI0003620E34
RNAse G
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_3522_5
Turicella otitidis, Turicella, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(3653..4333)
DNA (681bp) protein (227aa)
DNA polymerase III subunits gamma and tau (EC:2.7.7.7)
membrane protein Tax=Bradyrhizobium japonicum RepID=UPI000362B50A
Protein piccolo {ECO:0000313|EMBL:CCI83282.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Turicella.;" source="Turicella otitidis ATCC 51513.;"
PLM3_60_coex_sep16_scaffold_3522_6
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(4784..5971)
DNA (1188bp) protein (396aa)
Rod shape-determining protein RodA Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1AAV9_THECD
rod shape-determining protein RodA
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_3522_7
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(5979..7943)
DNA (1965bp) protein (655aa)
Penicillin-binding protein 2 Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1AAV8_THECD
penicillin-binding protein 2
Penicillin-binding protein 2 {ECO:0000313|EMBL:ACY97118.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM3_60_coex_sep16_scaffold_3522_8
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(7954..8454)
DNA (501bp) protein (167aa)
Rod shape-determining protein MreD Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8B3F0_FRADG
rod shape-determining protein MreD
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_3522_9
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(8466..9089)
DNA (624bp) protein (208aa)
Cell shape-determining protein MreC Tax=Actinomadura madurae LIID-AJ290 RepID=U2MXG6_9ACTO
rod shape-determining protein MreC
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_3522_10
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9338..9676
DNA (339bp) protein (113aa)
Uncharacterized protein Tax=Clostridium sp. CAG:242 RepID=R6D662_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA79651.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
PLM3_60_coex_sep16_scaffold_3522_11
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

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9680..9997
DNA (318bp) protein (106aa)
id=4318024 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM3_60_coex_sep16_scaffold_3522_12
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

10031..10489
DNA (459bp) protein (153aa)
Uncharacterized protein Tax=Clostridium leptum CAG:27 RepID=R6MZJ7_9CLOT
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM3_60_coex_sep16_scaffold_3522_13
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(10390..10806)
DNA (417bp) protein (139aa)
nucleoside-diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
Nucleoside diphosphate kinase Tax=Frankia sp. (strain EuI1c) RepID=E3ITV9_FRASU
PLM3_60_coex_sep16_scaffold_3522_14
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(10948..11901)
DNA (954bp) protein (318aa)
FolC bifunctional protein Tax=Frankia sp. (strain EAN1pec) RepID=A8L1W9_FRASN
bifunctional folylpolyglutamate synthase/dihydrofolate synthase
FolC bifunctional protein {ECO:0000313|EMBL:ABW14629.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
Displaying 14 items

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