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PLM3_60_coex_sep16_scaffold_2057

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_2057_1
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(2..754)
DNA (753bp) protein (251aa)
hypothetical protein Tax=Nonomuraea coxensis RepID=UPI0003612293
ribD; riboflavin biosynthesis protein RibD
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_2057_2
Desulfarculus baarsii, Desulfarculus, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

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1246..3015
DNA (1770bp) protein (590aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QKV5_DESB2
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:ADK86314.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfarculales; Desulfarculaceae; Desulfarculus.;" source="Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 /; 2st14).;"
PLM3_60_coex_sep16_scaffold_2057_3
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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comp(3094..3870)
DNA (777bp) protein (259aa)
Alpha/beta hydrolase fold protein Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TG80_9CHLR
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:EFH88782.1}; species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
alpha/beta hydrolase fold protein
PLM3_60_coex_sep16_scaffold_2057_4
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(3961..4884)
DNA (924bp) protein (308aa)
Response regulator receiver modulated diguanylate cyclase Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LUD7_ACIC1
response regulator receiver modulated diguanylate cyclase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_2057_5
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(4901..6205)
DNA (1305bp) protein (435aa)
Fmu (Sun) domain protein Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SJG3_NOCSJ
Fmu (Sun) domain-containing protein
Fmu (Sun) domain protein {ECO:0000313|EMBL:ABL81948.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
PLM3_60_coex_sep16_scaffold_2057_6
Kineosphaera limosa, Kineosphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(6202..7143)
DNA (942bp) protein (314aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; species="Bacteria; Actinobacteria; Micrococcales; Dermatophilaceae; Kineosphaera.;" source="Kineosphaera limosa NBRC 100340.;"
Methionyl-tRNA formyltransferase Tax=Kineosphaera limosa NBRC 100340 RepID=K6XCF6_9MICO
methionyl-tRNA formyltransferase
PLM3_60_coex_sep16_scaffold_2057_7
Arthrobacter sp. FB24, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(7146..7712)
DNA (567bp) protein (189aa)
peptide deformylase (EC:3.5.1.88)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. (strain FB24).;"
peptide deformylase Tax=Nocardioides sp. Iso805N RepID=UPI00036F2110
PLM3_60_coex_sep16_scaffold_2057_8
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(7775..9685)
DNA (1911bp) protein (637aa)
Probable primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
Putative uncharacterized protein Tax=Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 / NBRC 16125 / INA 9442) RepID=D9T5T7_MICAI
hypothetical protein
PLM3_60_coex_sep16_scaffold_2057_9
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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comp(9738..10931)
DNA (1194bp) protein (398aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidithrix.;" source="Acidithrix ferrooxidans.;"
S-adenosylmethionine synthase (EC:2.5.1.6)
S-adenosylmethionine synthase Tax=Actinomadura madurae LIID-AJ290 RepID=U2MES9_9ACTO
PLM3_60_coex_sep16_scaffold_2057_10
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

11386..11607
DNA (222bp) protein (74aa)
ECF subfamily RNA polymerase sigma-24 factor
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_2057_11
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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11604..11861
DNA (258bp) protein (86aa)
Putative transmembrane anti-sigma factor Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HGF6_ANADF
putative transmembrane anti-sigma factor
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_2057_12
Kitasatospora cheerisanensis, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(11872..13083)
DNA (1212bp) protein (404aa)
Phosphopantothenoylcysteine decarboxylase {ECO:0000313|EMBL:KDN86910.1}; EC=6.3.2.5 {ECO:0000313|EMBL:KDN86910.1};; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora cheerisanensis KCTC 2395.;"
coaBC; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase (EC:4.1.1.36 6.3.2.5)
phosphopantothenoylcysteine decarboxylase Tax=Streptomyces somaliensis RepID=UPI00029AA20A
PLM3_60_coex_sep16_scaffold_2057_13
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(13114..13365)
DNA (252bp) protein (84aa)
rpoZ; DNA-directed RNA polymerase subunit omega (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega Tax=Nocardioides sp. Iso805N RepID=UPI00037BBCA7
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_2057_14
unknown

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comp(13395..13556)
DNA (162bp) protein (54aa)
guanylate kinase (EC:2.7.4.8)
guanylate kinase Tax=Nesterenkonia sp. F RepID=UPI000255D3BD
Displaying 14 items

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