ggKbase home page

PLM3_60_coex_sep16_scaffold_2636

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_2636_1
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

292..582
DNA (291bp) protein (97aa)
Tfp pilus assembly protein PilE Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AWV4_RUBXD
Tfp pilus assembly protein PilE
Tax=RBG_16_Actinobacteria_64_13_curated
PLM3_60_coex_sep16_scaffold_2636_2
unknown

Not on your lists

579..911
DNA (333bp) protein (111aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_2636_3
Actinoplanes missouriensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

995..1792
DNA (798bp) protein (266aa)
Putative prepilin peptidase Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0GZD5_ACTM4
putative prepilin peptidase
Putative prepilin peptidase {ECO:0000313|EMBL:BAL86122.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64; / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431).;"
PLM3_60_coex_sep16_scaffold_2636_4
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1953..3002
DNA (1050bp) protein (350aa)
Type IV pilus assembly protein PilM Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LUH5_ACIC1
type IV pilus assembly protein PilM
Type IV pilus assembly protein PilM {ECO:0000313|EMBL:ABK53085.1}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_60_coex_sep16_scaffold_2636_5
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

3038..3745
DNA (708bp) protein (236aa)
Fimbrial assembly family protein Tax=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) RepID=A6WCE3_KINRD
fimbrial assembly family protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_2636_6
BJP_IG2158_Actinobacteria_57_21, Bacteria

Not on your lists

3742..4560
DNA (819bp) protein (273aa)
Pilus assembly protein PilO bin=GWF2_Methylomirabilis_70_14 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tfp pilus assembly protein PilO-like protein
Tax=BJP_IG2158_Actinobacteria_57_21
PLM3_60_coex_sep16_scaffold_2636_7
Blastobotrys adeninivorans, Blastobotrys, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

4557..5243
DNA (687bp) protein (229aa)
PREDICTED: sal-like protein 3 Tax=Orcinus orca RepID=UPI0002BD14AA
ARAD1A13222p {ECO:0000313|EMBL:CDP33609.1}; species="Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Trichomonascaceae; Blastobotrys.;" source="Blastobotrys adeninivorans (Yeast) (Arxula adeninivorans).;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_2636_8
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5372..6742
DNA (1371bp) protein (457aa)
hypothetical protein Tax=Sporichthya polymorpha RepID=UPI0003825FBE
Prepilin-type cleavage/methylation protein {ECO:0000313|EMBL:ERK72776.1}; species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_2636_9
unknown

Not on your lists

6739..7356
DNA (618bp) protein (206aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_2636_10
Agrococcus pavilionensis, Agrococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7379..8965
DNA (1587bp) protein (529aa)
hypothetical protein Tax=Sporichthya polymorpha RepID=UPI000365D583
Uncharacterized protein {ECO:0000313|EMBL:ERG63671.1}; species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agrococcus.;" source="Agrococcus pavilionensis RW1.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_2636_11
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9020..10219
DNA (1200bp) protein (400aa)
Chorismate synthase {ECO:0000255|HAMAP-Rule:MF_00300}; Short=CS {ECO:0000255|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000255|HAMAP-Rule:MF_00300};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000255|HAMAP-Rule:MF_00300}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
chorismate synthase (EC:4.2.3.5)
chorismate synthase Tax=Sporichthya polymorpha RepID=UPI00037100F6
PLM3_60_coex_sep16_scaffold_2636_12
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10357..10530
DNA (174bp) protein (58aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense DP7.;"
Shikimate kinase Tax=Desulfitobacterium hafniense RepID=B8FQ91_DESHD
hypothetical protein
Displaying 12 items

View Taxonomy