ggKbase home page

PLM3_60_coex_sep16_scaffold_3779

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_3779_1
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..221)
DNA (219bp) protein (73aa)
gltD; glutamate synthase (EC:1.4.1.13)
Glutamate synthase, NADH/NADPH, small subunit 1 Tax=Nitrobacter sp. Nb-311A RepID=A3WW58_9BRAD
Glutamate synthase, NADH/NADPH, small subunit 1 {ECO:0000313|EMBL:EAQ35779.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
PLM3_60_coex_sep16_scaffold_3779_2
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(477..3659)
DNA (3183bp) protein (1061aa)
Glutamate synthase (NADPH/NADH) large chain Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GYA9_9BRAD
Glutamate synthase (NADPH/NADH) large chain {ECO:0000313|EMBL:ERF82482.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
gltB; glutamate synthase large subunit
PLM3_60_coex_sep16_scaffold_3779_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3745..5103)
DNA (1359bp) protein (453aa)
glutamate synthase ferredoxin subunit (EC:1.4.7.1)
Glutamate synthase (NADH) large subunit {ECO:0000313|EMBL:ABD09214.1}; EC=1.4.1.14 {ECO:0000313|EMBL:ABD09214.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
Glutamate synthase (NADH) large subunit Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IRE6_RHOP2
PLM3_60_coex_sep16_scaffold_3779_4
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5564..6295
DNA (732bp) protein (244aa)
NitT/TauT family transport system substrate-binding protein Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HDD3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KJC58169.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_3779_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6504..7280)
DNA (777bp) protein (259aa)
Uncharacterized protein Tax=Bradyrhizobium sp. STM 3843 RepID=H0TYD8_9BRAD
Hydrolase {ECO:0000313|EMBL:KIZ48212.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_3779_6
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7554..8033)
DNA (480bp) protein (160aa)
Small heat shock protein Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZF38_9BRAD
Molecular chaperone {ECO:0000313|EMBL:KJC33848.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
small heat shock protein
PLM3_60_coex_sep16_scaffold_3779_7
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8268..9215
DNA (948bp) protein (316aa)
alpha/beta hydrolase Tax=Bradyrhizobium japonicum RepID=UPI000373C190
Alpha/beta hydrolase {ECO:0000313|EMBL:KJC49883.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
pldB; lysophospholipase
PLM3_60_coex_sep16_scaffold_3779_8
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9273..10301)
DNA (1029bp) protein (343aa)
Uncharacterized protein Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ER02_BRASB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ38596.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
PLM3_60_coex_sep16_scaffold_3779_9
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11264..11665)
DNA (402bp) protein (134aa)
hypothetical protein Tax=Bradyrhizobium japonicum RepID=UPI00036FD0CE
Uncharacterized protein {ECO:0000313|EMBL:EJZ36095.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_3779_10
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11922..12251)
DNA (330bp) protein (110aa)
Uncharacterized protein Tax=Bradyrhizobium sp. YR681 RepID=J3CQP6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EJN10659.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_3779_11
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12454..13092
DNA (639bp) protein (213aa)
Lipopolysaccharide export system protein LptA Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IFK8_9BRAD
Lipopolysaccharide export system protein LptA {ECO:0000313|EMBL:ERF82475.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
LysE family amino acid efflux protein
PLM3_60_coex_sep16_scaffold_3779_12
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13080..13934)
DNA (855bp) protein (285aa)
permease Tax=Bradyrhizobium elkanii RepID=UPI000363167F
Membrane protein {ECO:0000313|EMBL:KJC33919.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
membrane protein
PLM3_60_coex_sep16_scaffold_3779_13
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13999..14928
DNA (930bp) protein (310aa)
Transcriptional regulatory protein Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D367_BRAJP
Uncharacterized protein {ECO:0000313|EMBL:AHY54751.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
LysR family transcriptional regulator
PLM3_60_coex_sep16_scaffold_3779_14
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14947..15915)
DNA (969bp) protein (323aa)
MFS transporter Tax=Bradyrhizobium elkanii RepID=UPI0002DAF11B
Bradyrhizobium elkanii strain UASWS1015 Contig166, whole genome shotgun sequence {ECO:0000313|EMBL:KIU51301.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_3779_15
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16030..16122
DNA (93bp) protein (31aa)
Uncharacterized protein Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GYA0_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig166, whole genome shotgun sequence {ECO:0000313|EMBL:KIU51249.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
Displaying 15 items

View Taxonomy