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PLM3_60_coex_sep16_scaffold_11239

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_11239_1
unknown

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3..131
DNA (129bp) protein (43aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_11239_2
unknown

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comp(279..770)
DNA (492bp) protein (164aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_11239_3
R_OD1_Kaiserbacteria_54_22, Kaiserbacteria, Parcubacteria, Bacteria

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1662..1877
DNA (216bp) protein (72aa)
hypothetical protein Tax=Afipia birgiae RepID=UPI000362D658
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_54_22_curated
PLM3_60_coex_sep16_scaffold_11239_4
unknown

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2037..2399
DNA (363bp) protein (121aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_11239_5
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2564..2854
DNA (291bp) protein (97aa)
signal peptide protein Tax=Bradyrhizobium japonicum RepID=UPI00035FAEAD
Uncharacterized protein {ECO:0000313|EMBL:EJZ30446.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_11239_6
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3074..3235)
DNA (162bp) protein (54aa)
Uncharacterized protein Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DE81_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL10637.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
PLM3_60_coex_sep16_scaffold_11239_7
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3499..3786
DNA (288bp) protein (96aa)
Putative uncharacterized protein Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20Z77_RHOPB
Uncharacterized protein {ECO:0000313|EMBL:KJC59885.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_11239_8
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3889..4644
DNA (756bp) protein (252aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
NAD-dependent protein deacetylase Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DE80_BRAJP
NAD-dependent deacetylase
PLM3_60_coex_sep16_scaffold_11239_9
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4809..5471
DNA (663bp) protein (221aa)
cold-shock protein Tax=Bradyrhizobium elkanii RepID=UPI00038113A0
Cold-shock protein {ECO:0000313|EMBL:KJC59886.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
cold-shock DNA-binding domain-containing protein
PLM3_60_coex_sep16_scaffold_11239_10
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5624..6115
DNA (492bp) protein (164aa)
Uncharacterized protein Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HKE3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF85288.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_11239_trna_1
unknown

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6180..6253
DNA (74bp)
transferRNA Pro
PLM3_60_coex_sep16_scaffold_11239_11
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6317..6556)
DNA (240bp) protein (80aa)
hypothetical protein Tax=Bradyrhizobium elkanii RepID=UPI0003166376
Uncharacterized protein {ECO:0000313|EMBL:KJC60890.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_11239_12
unknown

Not on your lists

7155..7487
DNA (333bp) protein (111aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_11239_13
unknown

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8181..8819
DNA (639bp) protein (213aa)
poly(hydroxyalkanoate) granule-associated protein
PLM3_60_coex_sep16_scaffold_11239_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9025..10086)
DNA (1062bp) protein (354aa)
Vanillate O-demethylase oxygenase subunit (EC:1.14.13.82)
Uncharacterized protein Tax=Afipia broomeae ATCC 49717 RepID=K8P2R7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36862.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
PLM3_60_coex_sep16_scaffold_11239_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10104..11780)
DNA (1677bp) protein (559aa)
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (EC:2.1.1.14)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00050077};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07LS9_RHOP5
PLM3_60_coex_sep16_scaffold_11239_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11767..12387)
DNA (621bp) protein (207aa)
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (EC:2.1.1.14)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00050077};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q210Y8_RHOPB
PLM3_60_coex_sep16_scaffold_11239_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12800..13702)
DNA (903bp) protein (301aa)
Methylisocitrate lyase {ECO:0000256|RuleBase:RU361121}; EC=4.1.3.30 {ECO:0000256|RuleBase:RU361121};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
2,3-dimethylmalate lyase Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q210Y6_RHOPB
methylisocitrate lyase
PLM3_60_coex_sep16_scaffold_11239_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13713..14903)
DNA (1191bp) protein (397aa)
methylcitrate synthase (EC:2.3.3.5)
Citrate synthase Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q210Y5_RHOPB
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
PLM3_60_coex_sep16_scaffold_11239_19
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14863..15474)
DNA (612bp) protein (204aa)
prpD2; 2-methylcitrate dehydratase (EC:4.2.1.79)
2-methylcitrate dehydratase 2 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NRX3_9BRAD
2-methylcitrate dehydratase 2 {ECO:0000313|EMBL:EKS31856.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
Displaying 20 items

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