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PLM3_60_coex_sep16_scaffold_2882

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_2882_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..226)
DNA (225bp) protein (75aa)
Urease accessory protein UreD Tax=Bradyrhizobium sp. STM 3843 RepID=H0TXB4_9BRAD
Urease accessory protein UreD {ECO:0000256|HAMAP-Rule:MF_01384}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
urease accessory protein ureD
PLM3_60_coex_sep16_scaffold_2882_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(192..845)
DNA (654bp) protein (218aa)
Urease accessory protein UreG Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4Z050_BRASO
Urease accessory protein UreG {ECO:0000256|HAMAP-Rule:MF_01389}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ureG; urease accessory protein UreG
PLM3_60_coex_sep16_scaffold_2882_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(849..2558)
DNA (1710bp) protein (570aa)
Urease subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_01953, ECO:0000256|SAAS:SAAS00033844};; Urea amidohydrolase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ureC; urease subunit alpha (EC:3.5.1.5)
Urease subunit alpha Tax=Bradyrhizobium sp. STM 3843 RepID=H0TXB6_9BRAD
PLM3_60_coex_sep16_scaffold_2882_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2560..3255)
DNA (696bp) protein (232aa)
Urease {ECO:0000256|SAAS:SAAS00108089}; EC=3.5.1.5 {ECO:0000256|SAAS:SAAS00108089};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ureAB; bifunctional urease subunit gamma/beta (EC:3.5.1.5)
urease subunit beta Tax=Rhodopseudomonas sp. B29 RepID=UPI00034DB9C9
PLM3_60_coex_sep16_scaffold_2882_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3269..3943)
DNA (675bp) protein (225aa)
Urease accessory protein UreF Tax=Bradyrhizobium sp. STM 3843 RepID=H0TXB8_9BRAD
Urease accessory protein UreF {ECO:0000256|HAMAP-Rule:MF_01385}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
urease accessory protein UreF
PLM3_60_coex_sep16_scaffold_2882_6
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3943..4482)
DNA (540bp) protein (180aa)
urease accessory protein UreE Tax=Rhodopseudomonas sp. B29 RepID=UPI00034B3D79
Urease accessory protein UreE {ECO:0000256|HAMAP-Rule:MF_00822, ECO:0000256|SAAS:SAAS00072411}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
ureE; urease accessory protein UreE
PLM3_60_coex_sep16_scaffold_2882_7
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4597..5616)
DNA (1020bp) protein (340aa)
Homoserine O-acetyltransferase {ECO:0000256|SAAS:SAAS00070949, ECO:0000313|EMBL:CAL79531.1}; EC=2.3.1.- {ECO:0000256|SAAS:SAAS00276255};; EC=2.3.1.31 {ECO:0000256|SAAS:SAAS00070942, ECO:0000313|EMBL:CAL79531.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
hypothetical protein Tax=Rhodopseudomonas sp. B29 RepID=UPI00034A1507
hypothetical protein
PLM3_60_coex_sep16_scaffold_2882_8
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5685..7025)
DNA (1341bp) protein (447aa)
Uncharacterized protein Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4Z056_BRASO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL79532.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
PLM3_60_coex_sep16_scaffold_2882_9
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7257..8294)
DNA (1038bp) protein (346aa)
Aliphatic amidase {ECO:0000256|HAMAP-Rule:MF_01242}; EC=3.5.1.4 {ECO:0000256|HAMAP-Rule:MF_01242};; Acylamide amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01242}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Aliphatic amidase Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A7Z7_STAND
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
PLM3_60_coex_sep16_scaffold_2882_10
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8423..8824)
DNA (402bp) protein (134aa)
branched-chain amino acid ABC transporter ATP-binding protein (EC:3.6.3.-)
urea ABC transporter ATP-binding protein Tax=Rhizobium gallicum RepID=UPI000381202A
Putative ABC transporter component {ECO:0000313|EMBL:EHH02924.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
PLM3_60_coex_sep16_scaffold_2882_11
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8969..9718)
DNA (750bp) protein (250aa)
branched-chain amino acid ABC transporter ATP-binding protein (EC:3.6.3.-)
Putative branched-chain amino acid ABC transporter, ATP-binding protein Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4Z059_BRASO
Urea ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJC42313.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
PLM3_60_coex_sep16_scaffold_2882_12
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9724..10869)
DNA (1146bp) protein (382aa)
Amino acid/amide ABC transporter membrane protein 2, HAAT family Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EDA4_BRASB
branched-chain amino acid ABC transporter permease
Amino acid/amide ABC transporter membrane protein 2, HAAT family {ECO:0000313|EMBL:ABQ34148.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
PLM3_60_coex_sep16_scaffold_2882_13
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10873..11766)
DNA (894bp) protein (298aa)
Putative branched-chain amino acid ABC transporter, permease protein Tax=Bradyrhizobium sp. STM 3843 RepID=H0TXC4_9BRAD
Putative branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:CCE11112.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
branched-chain amino acid ABC transporter permease
PLM3_60_coex_sep16_scaffold_2882_14
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11831..13084)
DNA (1254bp) protein (418aa)
Putative aliphatic amidase expression-regulating protein (AmiC) Tax=Bradyrhizobium sp. STM 3843 RepID=H0TXC5_9BRAD
Putative aliphatic amidase expression-regulating protein (AmiC) {ECO:0000313|EMBL:CCE11113.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
aliphatic amidase expression-regulating protein
PLM3_60_coex_sep16_scaffold_2882_15
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13354..13962)
DNA (609bp) protein (203aa)
Putative response regulator with antiterminator output domain aliphatic amidase regulator (AmiR) Tax=Bradyrhizobium sp. STM 3843 RepID=H0TXC7_9BRAD
Putative response regulator with antiterminator output domain aliphatic amidase regulator (AmiR) {ECO:0000313|EMBL:CCE11115.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
response regulator
PLM3_60_coex_sep16_scaffold_2882_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13986..15170)
DNA (1185bp) protein (395aa)
Putative aliphatic amidase expression-regulating protein (AmiC) Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4Z064_BRASO
Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIZ34418.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
aliphatic amidase expression-regulating protein
PLM3_60_coex_sep16_scaffold_2882_17
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15317..16072)
DNA (756bp) protein (252aa)
Putative 3-ketoacyl-CoA reductase {ECO:0000313|EMBL:CCE04021.1}; EC=1.1.1.- {ECO:0000313|EMBL:CCE04021.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
3-ketoacyl-ACP reductase (EC:1.1.1.-)
Putative 3-ketoacyl-CoA reductase Tax=Bradyrhizobium sp. STM 3809 RepID=H0TC44_9BRAD
PLM3_60_coex_sep16_scaffold_2882_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16130..17644)
DNA (1515bp) protein (505aa)
amidase (EC:3.5.1.4)
Amidase {ECO:0000313|EMBL:AGU53690.1}; EC=3.5.1.4 {ECO:0000313|EMBL:AGU53690.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Amidase Tax=Variovorax paradoxus B4 RepID=T1XNJ5_VARPD
PLM3_60_coex_sep16_scaffold_2882_19
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17683..18219)
DNA (537bp) protein (179aa)
Putative urea ABC transporter, ATP-binding protein UrtE Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RT01_9PROT
ABC transporter {ECO:0000313|EMBL:GAN77297.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
branched-chain amino acid transporter, ATP-binding protein
Displaying 19 items

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