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PLM3_60_coex_sep16_scaffold_5714

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_5714_1
Desulfovibrio gigas, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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2..664
DNA (663bp) protein (221aa)
Putative type I phosphodiesterase/nucleotide pyrophosphatase Tax=Desulfovibrio gigas DSM 1382 = ATCC 19364 RepID=T2G810_DESGI
putative type I phosphodiesterase/nucleotide pyrophosphatase
Putative type I phosphodiesterase/nucleotide pyrophosphatase {ECO:0000313|EMBL:AGW12027.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio gigas DSM 1382 = ATCC 19364.;"
PLM3_60_coex_sep16_scaffold_5714_2
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

671..1402
DNA (732bp) protein (244aa)
Transcriptional regulator Tax=Saccharomonospora marina XMU15 RepID=H5X6P3_9PSEU
Transcriptional regulator {ECO:0000313|EMBL:EHR51264.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_5714_3
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

1525..2958
DNA (1434bp) protein (478aa)
pltA; FADH2-dependent halogenase PltA (EC:3.8.1.1)
hypothetical protein Tax=Streptomyces sulphureus RepID=UPI00037FF80C
Tax=RBG_13_Chloroflexi_68_17_curated
PLM3_60_coex_sep16_scaffold_5714_4
unknown

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3022..3243
DNA (222bp) protein (74aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_5714_5
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3280..4575
DNA (1296bp) protein (432aa)
Transporter, CPA2 family Tax=Calothrix sp. PCC 7507 RepID=K9PBK7_9CYAN
Na(+)/H(+) antiporter {ECO:0000313|EMBL:AKF04223.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
CPA2 family transporter
PLM3_60_coex_sep16_scaffold_5714_6
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(4750..5148)
DNA (399bp) protein (133aa)
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_5714_7
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

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5247..6644
DNA (1398bp) protein (466aa)
hypothetical protein bin=bin9_gal15 species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=bin9_gal15 organism_group=GAL15
hypothetical protein
Tax=CSP1_3_Armatimonadetes
PLM3_60_coex_sep16_scaffold_5714_8
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

6738..7148
DNA (411bp) protein (137aa)
adenylylsulfate kinase (EC:2.7.1.25)
Adenylyl-sulfate kinase {ECO:0000256|HAMAP-Rule:MF_00065, ECO:0000256|RuleBase:RU004347}; EC=2.7.1.25 {ECO:0000256|HAMAP-Rule:MF_00065, ECO:0000256|RuleBase:RU004347};; APS kinase {ECO:0000256|HAMAP-Rule:MF_00065}; ATP adenosine-5'-phosphosulfate 3'-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00065}; Adenosine-5'-phosphosulfate kinase {ECO:0000256|HAMAP-Rule:MF_00065}; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
Adenylyl-sulfate kinase Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CDF5_THET1
PLM3_60_coex_sep16_scaffold_5714_9
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7293..8015)
DNA (723bp) protein (241aa)
KfrA Tax=Delftia acidovorans RepID=G9C9R4_DELAC
KfrA {ECO:0000313|EMBL:AEX00529.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_5714_10
RBG_16_Actinobacteria_67_15_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

8245..9405
DNA (1161bp) protein (387aa)
IMP dehydrogenase family protein Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M333_ACIFD
inosine 5-monophosphate dehydrogenase
Tax=RBG_16_Actinobacteria_67_15_curated
PLM3_60_coex_sep16_scaffold_5714_11
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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9461..9697
DNA (237bp) protein (79aa)
CopG family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM3_60_coex_sep16_scaffold_5714_12
RBG_13_Spirochaetes_68_11_curated, Spirochaetes, Bacteria

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9895..10125
DNA (231bp) protein (77aa)
PIN domain family protein Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2B04E
UPF0129 protein
Tax=RBG_13_Spirochaetes_68_11_curated
PLM3_60_coex_sep16_scaffold_5714_13
BJP_IG2158_Actinobacteria_57_21, Bacteria

Not on your lists

10122..11678
DNA (1557bp) protein (519aa)
GMP synthase [glutamine-hydrolyzing] Tax=Frankia sp. CN3 RepID=G6HMF2_9ACTO
guaA; GMP synthase
Tax=BJP_IG2158_Actinobacteria_57_21
PLM3_60_coex_sep16_scaffold_5714_14
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11859..12350
DNA (492bp) protein (164aa)
Tax=RBG_16_Deltaproteobacteria_49_23_curated
PLM3_60_coex_sep16_scaffold_5714_15
Streptomyces roseochromogenus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12247..14721)
DNA (2475bp) protein (825aa)
Uncharacterized protein Tax=Streptomyces roseochromogenes subsp. oscitans RepID=V6L2Q5_STRRC
Uncharacterized protein {ECO:0000313|EMBL:EST35514.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseochromogenus subsp. oscitans DS 12.976.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_5714_16
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15422..15643
DNA (222bp) protein (74aa)
Potassium transporter Tax=Sorangium cellulosum So0157-2 RepID=S4XIB4_SORCE
potassium transporter
Potassium transporter {ECO:0000313|EMBL:AGP32291.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
PLM3_60_coex_sep16_scaffold_5714_17
RBG_16_Actinobacteria_68_21_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

15851..18040
DNA (2190bp) protein (730aa)
ATP-dependent DNA helicase PcrA Tax=Nonomuraea coxensis RepID=UPI00037779F0
ATP-dependent DNA helicase
Tax=RBG_16_Actinobacteria_68_21_curated
PLM3_60_coex_sep16_scaffold_5714_18
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(18042..18533)
DNA (492bp) protein (164aa)
FMN-binding pyridoxamine 5'-phosphate oxidase-like protein bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_5714_19
unknown

Not on your lists

18624..19022
DNA (399bp) protein (133aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_5714_20
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19078..19473)
DNA (396bp) protein (132aa)
hypothetical protein Tax=Novosphingobium sp. B-7 RepID=UPI0003B5F1A9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ69449.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
PLM3_60_coex_sep16_scaffold_5714_21
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19470..20285)
DNA (816bp) protein (272aa)
Uncharacterized protein Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VAY3_SPHWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ69449.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
PLM3_60_coex_sep16_scaffold_5714_22
unknown

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comp(20282..20449)
DNA (168bp) protein (56aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_5714_23
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

20543..21715
DNA (1173bp) protein (391aa)
Putative ATPase bin=GWA2_Elusimicrobia_69_24 species=GWA2_TM6_36_9 genus=GWA2_TM6_36_9 taxon_order=GWA2_TM6_36_9 taxon_class=GWA2_TM6_36_9 phylum=TM6 tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
ATPase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_5714_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21697..23037)
DNA (1341bp) protein (447aa)
hypothetical protein bin=RBG_19FT_COMBO_GAL15_69_19 species=Burkholderia terrae genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
adenylyl cyclase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_5714_25
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

23101..23508
DNA (408bp) protein (136aa)
methylmalonyl-CoA mutase Tax=Catelliglobosispora koreensis RepID=UPI000373CEEE
cobalamin B12-binding domain-containing protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_5714_26
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

23509..24654
DNA (1146bp) protein (382aa)
succinyl-CoA synthetase subunit beta (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit beta Tax=Frankia sp. (strain EuI1c) RepID=E3J240_FRASU
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_5714_27
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

24654..25493
DNA (840bp) protein (280aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M2P4_ACIFD
succinyl-CoA synthetase subunit alpha
Tax=RBG_16_Actinobacteria_68_12_curated
Displaying 27 items

View Taxonomy