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PLM3_60_coex_sep16_scaffold_2052

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_2052_1
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..1155)
DNA (1155bp) protein (385aa)
Uncharacterized protein Tax=Frankia alni (strain ACN14a) RepID=Q0RDW2_FRAAA
multidrug resistance efflux protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ64354.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
PLM3_60_coex_sep16_scaffold_2052_2
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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1295..2539
DNA (1245bp) protein (415aa)
Uncharacterized protein Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0K5H8_SACES
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH32857.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
PLM3_60_coex_sep16_scaffold_2052_3
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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2654..4906
DNA (2253bp) protein (751aa)
HAD-superfamily subfamily IB hydrolase, TIGR01490 Tax=Frankia sp. (strain EAN1pec) RepID=A8L880_FRASN
HAD family hydrolase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_2052_4
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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4906..6111
DNA (1206bp) protein (402aa)
zinc-binding alcohol dehydrogenase Tax=Actinopolymorpha alba RepID=UPI000369C7E3
alcohol dehydrogenase zinc-binding domain-containing protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_2052_5
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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6122..7708
DNA (1587bp) protein (529aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00036737D9
hypothetical protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_2052_6
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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7708..8613
DNA (906bp) protein (302aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI000375711B
phospholipid/glycerol acyltransferase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_2052_7
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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8610..9215
DNA (606bp) protein (202aa)
Putative TetR family transcriptional regulator Tax=Ilumatobacter coccineus YM16-304 RepID=M5A2C3_9ACTN
putative TetR family transcriptional regulator
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_2052_8
unknown

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9285..10058
DNA (774bp) protein (258aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_2052_9
Streptomyces ipomoeae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(10149..10691)
DNA (543bp) protein (181aa)
Transcriptional regulator, TetR family Tax=Streptomyces ipomoeae 91-03 RepID=L1KZG7_9ACTO
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EKX65934.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces ipomoeae 91-03.;"
TetR family transcriptional regulator
PLM3_60_coex_sep16_scaffold_2052_10
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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10811..11773
DNA (963bp) protein (321aa)
hypothetical protein Tax=Arthrobacter sp. 131MFCol6.1 RepID=UPI00036F53F2
NADPH:quinone reductase and related Zn-dependent oxidoreductase
NADPH:quinone reductase and related Zn-dependent oxidoreductase {ECO:0000313|EMBL:AHY45646.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
PLM3_60_coex_sep16_scaffold_2052_11
Cellulomonas cellasea, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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11800..12528
DNA (729bp) protein (243aa)
hypothetical protein Tax=Salinispora arenicola RepID=UPI000372A373
Uncharacterized protein {ECO:0000313|EMBL:KGM00805.1}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas cellasea DSM 20118.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_2052_12
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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12569..13120
DNA (552bp) protein (184aa)
Putative uncharacterized protein Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IK86_ANADE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC82066.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-C).;"
PLM3_60_coex_sep16_scaffold_2052_13
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(13130..13501)
DNA (372bp) protein (124aa)
hypothetical protein bin=bin8_Chloro species=Methanomethylovorans hollandica genus=Methanomethylovorans taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=bin8_Chloro organism_group=Chloroflexi
hypothetical protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_2052_14
GWB2_Ignavibacteria_35_6b_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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13556..14077
DNA (522bp) protein (174aa)
type 11 methyltransferase bin=bin9_gal15 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin9_gal15 organism_group=GAL15
type 11 methyltransferase
Tax=GWB2_Ignavibacteria_35_6b_curated
PLM3_60_coex_sep16_scaffold_2052_15
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

14148..14426
DNA (279bp) protein (93aa)
Uncharacterized protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I631_CALAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM00719.1}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
PLM3_60_coex_sep16_scaffold_2052_16
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

14466..15206
DNA (741bp) protein (247aa)
Uncharacterized protein Tax=Ilumatobacter coccineus YM16-304 RepID=M5A4L9_9ACTN
hypothetical protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_2052_17
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15230..15805)
DNA (576bp) protein (192aa)
30S ribosomal protein S4 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6Q3Q5_9FIRM
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter subterraneus DSM 13965.;"
30S ribosomal protein S4
PLM3_60_coex_sep16_scaffold_2052_18
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

15857..16810
DNA (954bp) protein (318aa)
Thiamine-phosphate pyrophosphorylase protein {ECO:0000313|EMBL:ERJ05693.1}; EC=2.5.1.3 {ECO:0000313|EMBL:ERJ05693.1};; species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Halorhabdus tiamatea SARL4B.;"
Thiamine-phosphate pyrophosphorylase protein Tax=Halorhabdus tiamatea SARL4B RepID=U2DZZ8_9EURY
ADP-ribosylglycohydrolase
PLM3_60_coex_sep16_scaffold_2052_19
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(16812..17828)
DNA (1017bp) protein (339aa)
6-phosphogluconate dehydrogenase (EC:1.1.1.44)
6-phosphogluconate dehydrogenase, decarboxylating Tax=Frankia sp. CN3 RepID=G6HHB1_9ACTO
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_2052_20
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(17830..20466)
DNA (2637bp) protein (879aa)
Transaldolase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C7X8_SPHTD
transaldolase
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3_60_coex_sep16_scaffold_2052_21
RBG_16_Actinobacteria_68_21_curated, Acidimicrobiia, Actinobacteria, Bacteria

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comp(20569..21243)
DNA (675bp) protein (225aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3Q696_STANL
Tax=RBG_16_Actinobacteria_68_21_curated
PLM3_60_coex_sep16_scaffold_2052_22

Not on your lists

21363..22625
DNA (1263bp) protein (421aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TZ08_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:KKM63054.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
thioredoxin reductase
PLM3_60_coex_sep16_scaffold_2052_23
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(22877..23422)
DNA (546bp) protein (182aa)
RNA polymerase sigma24 factor Tax=Frankia sp. BMG5.12 RepID=UPI0003704004
ECF subfamily RNA polymerase sigma-24 subunit
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_2052_24
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(23551..24582)
DNA (1032bp) protein (344aa)
hypothetical protein Tax=Sporichthya polymorpha RepID=UPI00036E40A7
NLP/P60 protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
Displaying 24 items

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