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PLM3_60_coex_sep16_scaffold_972

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_972_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(3..743)
DNA (741bp) protein (247aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_972_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(791..2179)
DNA (1389bp) protein (463aa)
GTPase Der bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
small GTP-binding protein domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_972_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2184..3506)
DNA (1323bp) protein (441aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
iron-sulfur cluster-binding oxidoreductase, cyano_FeS_chp family
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_972_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3484..4056)
DNA (573bp) protein (191aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_972_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4064..5356)
DNA (1293bp) protein (431aa)
GTPase HflX bin=GWA2_Methylomirabilis_73_35 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HSR1-like GTP-binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_972_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5353..6378)
DNA (1026bp) protein (342aa)
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_972_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6399..8078)
DNA (1680bp) protein (560aa)
DNA mismatch repair protein MutL bin=GWC2_Methylomirabilis_70_24 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
DNA mismatch repair protein mutL
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_972_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8075..10636)
DNA (2562bp) protein (854aa)
DNA mismatch repair protein MutS bin=GWC2_Methylomirabilis_70_24 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
DNA mismatch repair protein MutS
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_972_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10629..11084)
DNA (456bp) protein (152aa)
Histidine triad (HIT) protein bin=GWA2_Methylomirabilis_73_35 species=Thermococcus sp. CL1 genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histidine triad (HIT) protein (hit)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_972_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11153..11428)
DNA (276bp) protein (92aa)
Integration host factor, beta subunit, putative bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histone family protein DNA-binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_972_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11682..12572)
DNA (891bp) protein (297aa)
peptidase S49, putative signal peptide peptidase SppA (EC:3.4.21.-); K04773 protease IV [EC:3.4.21.-] bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
peptidase S49, putative signal peptide peptidase SppA (EC:3.4.21.-)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_972_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(12574..14301)
DNA (1728bp) protein (576aa)
30S ribosomal protein S1 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rpsA; 30S ribosomal protein S1
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_972_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14319..14975)
DNA (657bp) protein (219aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
1-acyl-sn-glycerol-3-phosphate acyltransferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_972_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14976..15641)
DNA (666bp) protein (222aa)
cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase bin=GWC2_Methylomirabilis_70_24 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_60_coex_sep16_scaffold_972_15
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15658..16848)
DNA (1191bp) protein (397aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
3-phosphoshikimate 1-carboxyvinyltransferase Tax=Geobacter sulfurreducens RepID=AROA_GEOSL
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase
PLM3_60_coex_sep16_scaffold_972_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16845..17696)
DNA (852bp) protein (284aa)
prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase family protein bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_972_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17693..18805)
DNA (1113bp) protein (371aa)
histidinol-phosphate aminotransferase (EC:2.6.1.9); K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] bin=bin7_NC10_sister species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hisC; histidinol-phosphate aminotransferase (EC:2.6.1.9)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_972_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18815..19876)
DNA (1062bp) protein (354aa)
chorismate mutase (EC:4.2.1.51)
Chorismate mutase/prephenate dehydratase bin=GWA2_Methylomirabilis_73_35 species=Azoarcus sp. KH32C genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_972_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(20076..20480)
DNA (405bp) protein (135aa)
Pseudouridine synthase bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pseudouridine synthase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Displaying 19 items

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