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PLM3_60_coex_sep16_scaffold_3223

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_3223_1
Aeromonas diversa, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..735)
DNA (735bp) protein (245aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI0003626F04
methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:ENY73320.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas diversa 2478-85.;"
PLM3_60_coex_sep16_scaffold_3223_2
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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1113..2528
DNA (1416bp) protein (472aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
Amidophosphoribosyltransferase Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2S5P1_GEOOG
amidophosphoribosyltransferase
PLM3_60_coex_sep16_scaffold_3223_3
Tetrasphaera jenkinsii, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2525..3580
DNA (1056bp) protein (352aa)
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera jenkinsii Ben 74.;"
Phosphoribosylformylglycinamidine cyclo-ligase Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LWN3_ACIC1
PLM3_60_coex_sep16_scaffold_3223_4
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(3577..4656)
DNA (1080bp) protein (360aa)
leucine dehydrogenase Tax=Alicyclobacillus pohliae RepID=UPI0003648468
Glutamate dehydrogenase/leucine dehydrogenase
Glutamate dehydrogenase/leucine dehydrogenase {ECO:0000313|EMBL:AHY45729.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
PLM3_60_coex_sep16_scaffold_3223_5
Streptomyces natalensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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4772..5599
DNA (828bp) protein (276aa)
Uncharacterized protein Tax=Streptomyces albulus CCRC 11814 RepID=S0H0F2_STRA9
Uncharacterized protein {ECO:0000313|EMBL:KIZ19607.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces natalensis ATCC 27448.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_3223_6
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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5775..5987
DNA (213bp) protein (71aa)
DNA-binding protein Tax=Actinopolymorpha alba RepID=UPI000365D564
DNA-binding protein {ECO:0000313|EMBL:EWT00941.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
excisionase family DNA binding domain-containing protein
PLM3_60_coex_sep16_scaffold_3223_7
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(6018..6893)
DNA (876bp) protein (292aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2MNC1_9ACTO
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABG03300.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3_60_coex_sep16_scaffold_3223_8
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

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comp(6912..8543)
DNA (1632bp) protein (544aa)
id=14631018 bin=bin9_gal15 tax=bin9_gal15 organism_group=GAL15
Tax=CSP1_3_Armatimonadetes
PLM3_60_coex_sep16_scaffold_3223_9
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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9117..10076
DNA (960bp) protein (320aa)
hypothetical protein Tax=Streptomyces sp. CNS335 RepID=UPI00037FED39
Exonuclease III {ECO:0000313|EMBL:KJE25316.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
endonuclease/exonuclease/phosphatase
PLM3_60_coex_sep16_scaffold_3223_10
Arthrobacter siccitolerans, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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10389..11156
DNA (768bp) protein (256aa)
PASTA-related domain-containing protein (Fragment) Tax=Arthrobacter sp. SJCon RepID=L8TGX1_9MICC
Uncharacterized protein {ECO:0000313|EMBL:CCQ47163.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter siccitolerans.;"
PASTA-related domain-containing protein
PLM3_60_coex_sep16_scaffold_3223_11
unknown

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11245..11676
DNA (432bp) protein (144aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3223_12
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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12186..12989
DNA (804bp) protein (268aa)
Uncharacterized protein Tax=Gordonia sp. KTR9 RepID=J9SP36_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KJL17558.1}; species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_3223_13
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(13193..13555)
DNA (363bp) protein (121aa)
Uncharacterized protein Tax=Frankia alni (strain ACN14a) RepID=Q0RC40_FRAAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ64988.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
PLM3_60_coex_sep16_scaffold_3223_14
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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14124..14405
DNA (282bp) protein (94aa)
hypothetical protein Tax=Frankia sp. BMG5.12 RepID=UPI00037E8B60
Integrase family protein {ECO:0000313|EMBL:EFC86146.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
integrase protein
PLM3_60_coex_sep16_scaffold_3223_15
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

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14514..17714
DNA (3201bp) protein (1067aa)
adenylate/guanylate cyclase bin=bin8_Chloro species=Frankia sp. genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
guanylate cyclase
Tax=CSP1_4_Chloroflexi
PLM3_60_coex_sep16_scaffold_3223_trna_1
unknown

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comp(18203..18275)
DNA (73bp)
transferRNA Phe
Displaying 16 items

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