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PLM3_60_coex_sep16_scaffold_3348

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_3348_1
Methanosaeta harundinacea, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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3..3455
DNA (3453bp) protein (1151aa)
WD repeat protein Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WPS4_METH6
WD repeat protein
WD repeat protein {ECO:0000313|EMBL:AET65436.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta harundinacea (strain 6Ac).;"
PLM3_60_coex_sep16_scaffold_3348_2
Burkholderia terrae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3452..4600
DNA (1149bp) protein (383aa)
hypothetical protein Tax=Nodosilinea nodulosa RepID=UPI00031E3702
Serine protease, subtilase family protein {ECO:0000313|EMBL:EIN02909.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia terrae BS001.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_3348_3
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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4730..5539
DNA (810bp) protein (270aa)
Aldo/keto reductase Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SEE9_NOCSJ
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:ABL80184.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
PLM3_60_coex_sep16_scaffold_3348_4
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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5875..6498
DNA (624bp) protein (208aa)
Helix-turn-helix domain protein Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PPN7_KRIFD
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ADB30999.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
PLM3_60_coex_sep16_scaffold_3348_5
Streptomonospora alba, Streptomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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6610..7428
DNA (819bp) protein (273aa)
Uncharacterized protein Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8B118_FRADG
Translation initiation factor IF-2 {ECO:0000313|EMBL:KIH97494.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Streptomonospora.;" source="Streptomonospora alba.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_3348_6
Lechevalieria aerocolonigenes, Lechevalieria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(7435..7845)
DNA (411bp) protein (137aa)
Uncharacterized protein Tax=Streptomyces viridochromogenes Tue57 RepID=L8PHB2_STRVR
Glyoxalase {ECO:0000313|EMBL:KJK47788.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Lechevalieria.;" source="Lechevalieria aerocolonigenes (Nocardia aerocolonigenes); (Saccharothrix aerocolonigenes).;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_3348_7
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(7860..8660)
DNA (801bp) protein (267aa)
AraC family transcriptional regulator Tax=Amycolatopsis balhimycina RepID=UPI00036040EA
AraC family transcriptional regulator {ECO:0000313|EMBL:KDN18262.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
AraC family transcriptional regulator
PLM3_60_coex_sep16_scaffold_3348_8
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8711..9298
DNA (588bp) protein (196aa)
lysine transporter LysE Tax=Paracoccus sp. N5 RepID=UPI0003617682
Transporter, LysE family
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
PLM3_60_coex_sep16_scaffold_3348_9
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(9302..10399)
DNA (1098bp) protein (366aa)
Putative uncharacterized protein Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NPY3_ROSCS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABU59629.1}; Flags: Precursor;; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
PLM3_60_coex_sep16_scaffold_3348_10
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10588..11901
DNA (1314bp) protein (438aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI00037D5086
Sugar ABC transporter, substrate-binding protein {ECO:0000313|EMBL:EHK55797.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ugpB; glycerol-3-phosphate-binding periplasmic protein
PLM3_60_coex_sep16_scaffold_3348_11
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11923..12801
DNA (879bp) protein (293aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI0003770780
ABC transporter permease {ECO:0000313|EMBL:EHK55796.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ABC transporter permease
PLM3_60_coex_sep16_scaffold_3348_12
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12798..13688
DNA (891bp) protein (297aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI00035CA2AF
Permease protein of sugar ABC transporter {ECO:0000313|EMBL:EHK55795.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ABC transporter permease
PLM3_60_coex_sep16_scaffold_3348_13
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13706..14569)
DNA (864bp) protein (288aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI00037AA84B
LacI family transcriptional regulator {ECO:0000313|EMBL:KDP70504.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
LacI family transcriptional regulator
Displaying 13 items

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