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PLM3_60_coex_sep16_scaffold_3844

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_3844_1

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1..537
DNA (537bp) protein (179aa)
Resolvase domain protein Tax=mine drainage metagenome RepID=T1AUR2_9ZZZZ
Resolvase domain protein {ECO:0000313|EMBL:EQD45800.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
resolvase
PLM3_60_coex_sep16_scaffold_3844_2

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537..2213
DNA (1677bp) protein (559aa)
Uncharacterized protein Tax=mine drainage metagenome RepID=T1CC70_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD78953.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
transposase, IS605 OrfB family
PLM3_60_coex_sep16_scaffold_3844_3
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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comp(2202..2414)
DNA (213bp) protein (71aa)
Rhodanese domain protein Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TV03_9CHLR
Rhodanese domain protein {ECO:0000313|EMBL:EFH85329.1}; species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
PLM3_60_coex_sep16_scaffold_3844_4
Cellulomonas carbonis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(2417..2962)
DNA (546bp) protein (182aa)
Cyclic nucleotide-binding protein Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SE40_GEOOG
Na(+)/H(+) antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; Sodium/proton antiporter NhaA {ECO:0000256|HAMAP-Rule:MF_01844}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas carbonis T26.;"
cyclic nucleotide-binding protein
PLM3_60_coex_sep16_scaffold_3844_5
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2993..3154)
DNA (162bp) protein (54aa)
sn-glycerol-3-phosphate import ATP-binding protein UgpC {ECO:0000256|HAMAP-Rule:MF_01727}; EC=3.6.3.20 {ECO:0000256|HAMAP-Rule:MF_01727};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
ABC transporter ATP-binding protein Tax=Nocardiopsis gilva RepID=UPI00034960B5
ABC transporter ATP-binding protein
PLM3_60_coex_sep16_scaffold_3844_6
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3255..3614)
DNA (360bp) protein (120aa)
Pirin-like protein Tax=Clostridium ultunense Esp RepID=M1ZAY7_9CLOT
Pirin-like protein {ECO:0000313|EMBL:CCQ94893.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
pirin
PLM3_60_coex_sep16_scaffold_3844_7
unknown

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comp(3660..4073)
DNA (414bp) protein (138aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3844_8
Streptomyces bottropensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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4172..4864
DNA (693bp) protein (231aa)
TetR family transcriptional regulator Tax=Streptomyces bottropensis ATCC 25435 RepID=M3EUX8_9ACTO
TetR family transcriptional regulator {ECO:0000313|EMBL:EMF52953.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bottropensis ATCC 25435.;"
TetR family transcriptional regulator
PLM3_60_coex_sep16_scaffold_3844_9
Rhodococcus jostii, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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5032..5898
DNA (867bp) protein (289aa)
epoxide hydrolase (EC:3.3.2.9)
Epoxide hydrolase {ECO:0000313|EMBL:ABG99877.1}; EC=3.3.2.9 {ECO:0000313|EMBL:ABG99877.1};; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus jostii (strain RHA1).;"
Epoxide hydrolase Tax=Rhodococcus sp. (strain RHA1) RepID=Q0RXV9_RHOSR
PLM3_60_coex_sep16_scaffold_3844_10
unknown

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comp(6270..6458)
DNA (189bp) protein (63aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3844_11
unknown

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comp(6452..6775)
DNA (324bp) protein (108aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3844_12
unknown

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comp(6750..7214)
DNA (465bp) protein (155aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_3844_13
Arthrobacter globiformis, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(7483..8244)
DNA (762bp) protein (254aa)
ABC transporter permease protein Tax=Arthrobacter globiformis NBRC 12137 RepID=H0QQ77_ARTGO
Transport permease protein {ECO:0000256|RuleBase:RU361157}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter globiformis NBRC 12137.;"
ABC transporter, efflux permease protein
PLM3_60_coex_sep16_scaffold_3844_14
Arthrobacter globiformis, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(8254..8934)
DNA (681bp) protein (227aa)
ABC transporter ATP-binding protein Tax=Arthrobacter globiformis NBRC 12137 RepID=H0QQ76_ARTGO
ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAB14977.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter globiformis NBRC 12137.;"
ABC transporter-like protein
PLM3_60_coex_sep16_scaffold_3844_15
Rhodococcus rhodochrous, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(8931..9281)
DNA (351bp) protein (117aa)
Uncharacterized protein Tax=Rhodococcus sp. EsD8 RepID=N1M497_9NOCA
Putative conserved protein UCP029876 {ECO:0000313|EMBL:ETT27091.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus rhodochrous ATCC 21198.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_3844_16
Arthrobacter globiformis, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(9284..9613)
DNA (330bp) protein (110aa)
Putative PadR family transcriptional regulator Tax=Arthrobacter globiformis NBRC 12137 RepID=H0QQ74_ARTGO
Putative PadR family transcriptional regulator {ECO:0000313|EMBL:GAB14975.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter globiformis NBRC 12137.;"
PadR family transcriptional regulator
PLM3_60_coex_sep16_scaffold_3844_17
Terrabacter sp. 28, Terrabacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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10601..11002
DNA (402bp) protein (134aa)
nitroreductase Tax=Actinoplanes globisporus RepID=UPI00037B3240
Nitroreductase {ECO:0000313|EMBL:KJK10067.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Terrabacter.;" source="Terrabacter sp. 28.;"
nitroreductase
PLM3_60_coex_sep16_scaffold_3844_18
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(11035..11673)
DNA (639bp) protein (213aa)
hypothetical protein Tax=Pseudonocardia sp. P1 RepID=UPI0001FFDCAC
Uncharacterized protein {ECO:0000313|EMBL:EWT06250.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_3844_19
Frankia sp. BMG5.23, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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11693..11953
DNA (261bp) protein (87aa)
Putative uncharacterized protein Tax=Frankia sp. (strain CcI3) RepID=Q2JA91_FRASC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDA42748.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. BMG5.23.;"
Displaying 19 items

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