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PLM3_60_coex_sep16_scaffold_1323

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_1323_1
unknown

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comp(251..415)
DNA (165bp) protein (55aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1323_2
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(996..2612)
DNA (1617bp) protein (539aa)
Putative exporter of polyketide antibiotics Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0JWM4_SACES
putative exporter of polyketide antibiotics
Putative exporter of polyketide antibiotics {ECO:0000313|EMBL:CCH30451.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
PLM3_60_coex_sep16_scaffold_1323_3
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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comp(2609..3550)
DNA (942bp) protein (314aa)
tetronasin ABC transporter ATP-binding protein Tax=Actinokineospora enzanensis RepID=UPI0003632486
ABC transporter-like protein
ABC transporter related protein {ECO:0000313|EMBL:EFH84340.1}; Flags: Precursor;; species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
PLM3_60_coex_sep16_scaffold_1323_4
Saccharothrix sp. ST-888, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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3640..4098
DNA (459bp) protein (153aa)
Regulatory protein MarR Tax=Streptomyces violaceusniger Tu 4113 RepID=G2P9Z6_STRVO
MarR family transcriptional regulator {ECO:0000313|EMBL:KJK56513.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix sp. ST-888.;"
regulatory protein MarR
PLM3_60_coex_sep16_scaffold_1323_5
RBG_16_Actinobacteria_68_21_curated, Acidimicrobiia, Actinobacteria, Bacteria

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comp(4091..5542)
DNA (1452bp) protein (484aa)
Putative VWA containing CoxE family protein Tax=Candidatus Microthrix parvicella RN1 RepID=R4YVJ7_9ACTN
hypothetical protein
Tax=RBG_16_Actinobacteria_68_21_curated
PLM3_60_coex_sep16_scaffold_1323_6
unknown

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5595..6503
DNA (909bp) protein (303aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1323_7
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(6478..7194)
DNA (717bp) protein (239aa)
IclR family transcriptional regulator Tax=Cupriavidus sp. WS RepID=UPI00036D955D
Micromonospora carbonacea strain JXNU-1 contig3, whole genome shotgun sequence {ECO:0000313|EMBL:KIR61451.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
pcaR; Transcriptional ragulator, controlling aromatics degradation
PLM3_60_coex_sep16_scaffold_1323_8
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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7364..7867
DNA (504bp) protein (168aa)
hypothetical protein bin=bin7_NC10_sister species=Sphingomonas sp. TTNP3 genus=Sphingomonas taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hydroxyquinol 1,2-dioxygenase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_60_coex_sep16_scaffold_1323_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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7986..8981
DNA (996bp) protein (332aa)
hypothetical protein bin=bin7_NC10_sister species=Pseudomonas aeruginosa genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_60_coex_sep16_scaffold_1323_10
Burkholderia sp. RPE64, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8990..10471
DNA (1482bp) protein (494aa)
betaine-aldehyde dehydrogenase Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI00037E14EE
betaine-aldehyde dehydrogenase
Betaine-aldehyde dehydrogenase {ECO:0000313|EMBL:BAN26105.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. RPE64.;"
PLM3_60_coex_sep16_scaffold_1323_11
Burkholderia jiangsuensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10471..11538
DNA (1068bp) protein (356aa)
Maleylacetate reductase Tax=Streptomyces canus RepID=UPI00036592D4
Maleylacetate reductase {ECO:0000313|EMBL:KAK47916.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia jiangsuensis.;"
maleylacetate reductase
PLM3_60_coex_sep16_scaffold_1323_12
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

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11582..12850
DNA (1269bp) protein (423aa)
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein bin=bin8_Chloro species=Bradyrhizobium sp. genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin8_Chloro organism_group=Chloroflexi
ABC-type branched-chain amino acid transport system, periplasmic component
Tax=CSP1_4_Chloroflexi
PLM3_60_coex_sep16_scaffold_1323_13
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

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12877..14175
DNA (1299bp) protein (433aa)
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein bin=bin8_Chloro species=Bradyrhizobium sp. genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin8_Chloro organism_group=Chloroflexi
ABC transporter substrate-binding protein
Tax=CSP1_4_Chloroflexi
PLM3_60_coex_sep16_scaffold_1323_14
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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14272..15048
DNA (777bp) protein (259aa)
putative branched-chain amino acid ABC transporter ATP-binding protein bin=bin8_Chloro species=Pusillimonas noertemannii genus=Pusillimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin8_Chloro organism_group=Chloroflexi
putative branched-chain amino acid ABC transporter ATP-binding protein
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
PLM3_60_coex_sep16_scaffold_1323_15
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15048..15752
DNA (705bp) protein (235aa)
High affinity branched-chain amino acid ABC transporter, ATP-binding protein Tax=Nocardioidaceae bacterium Broad-1 RepID=E9UPM9_9ACTO
livF; high-affinity branched-chain amino acid ABC transporter ATP-binding protein
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
PLM3_60_coex_sep16_scaffold_1323_16
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

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15749..16621
DNA (873bp) protein (291aa)
putative branched-chain amino acid ABC transporter permease protein bin=bin8_Chloro species=unknown genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin8_Chloro organism_group=Chloroflexi
putative branched-chain amino acid ABC transporter permease protein
Tax=CSP1_4_Chloroflexi
PLM3_60_coex_sep16_scaffold_1323_17
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

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16618..17658
DNA (1041bp) protein (347aa)
ABC transporter permease bin=bin8_Chloro species=Pseudomonas pseudoalcaligenes genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin8_Chloro organism_group=Chloroflexi
hypothetical protein
Tax=RBG_16_Actinobacteria_64_13_curated
PLM3_60_coex_sep16_scaffold_1323_18
actinobacterium acAcidi, Actinobacteria, Actinobacteria, Bacteria

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17658..18530
DNA (873bp) protein (291aa)
hypothetical protein Tax=Candidatus Microthrix parvicella RepID=UPI000377418A
Putative ATPase chaperone CoxD {ECO:0000313|EMBL:KGA11165.1}; species="Bacteria; Actinobacteria.;" source="actinobacterium acAcidi.;"
coxD; putative ATPase chaperone CoxD
PLM3_60_coex_sep16_scaffold_1323_19
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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18542..19150
DNA (609bp) protein (203aa)
Intradiol ring-cleavage dioxygenase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZJ5_RUBXD
intradiol ring-cleavage dioxygenase
Intradiol ring-cleavage dioxygenase {ECO:0000313|EMBL:ABG03183.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
Displaying 19 items

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