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PLM3_60_coex_sep16_scaffold_1389

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_1389_1
unknown

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2..130
DNA (129bp) protein (43aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1389_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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comp(182..835)
DNA (654bp) protein (218aa)
msrA; methionine-s-sulfoxide reductase; K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] bin=bin7_NC10_sister species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
msrA; methionine-s-sulfoxide reductase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_60_coex_sep16_scaffold_1389_3
Streptomyces bingchenggensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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985..4164
DNA (3180bp) protein (1060aa)
LuxR family transcriptional regulator Tax=Streptomyces bingchenggensis (strain BCW-1) RepID=D7CAV1_STRBB
LuxR family transcriptional regulator
LuxR family transcriptional regulator {ECO:0000313|EMBL:ADI08668.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bingchenggensis (strain BCW-1).;"
PLM3_60_coex_sep16_scaffold_1389_4
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(4172..4963)
DNA (792bp) protein (264aa)
ABC transporter permease Tax=Nocardiopsis gilva RepID=UPI0003487375
Transport permease protein {ECO:0000256|RuleBase:RU361157}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium sp. MJ126-NF4.;"
ABC transporter permease
PLM3_60_coex_sep16_scaffold_1389_5
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(4960..5766)
DNA (807bp) protein (269aa)
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA (EC:3.6.3.-)
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA {ECO:0000313|EMBL:AHH96560.1}; EC=3.6.3.- {ECO:0000313|EMBL:AHH96560.1};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI000382BBB9
PLM3_60_coex_sep16_scaffold_1389_6
Streptomyces sp. AA4, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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5976..6335
DNA (360bp) protein (120aa)
hypothetical protein Tax=Leifsonia sp. 109 RepID=UPI00036C31D2
riboflavin biosynthesis protein
Dihydrofolate reductase {ECO:0000313|EMBL:EFL10426.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AA4.;"
PLM3_60_coex_sep16_scaffold_1389_7
Streptomyces sp. HGB0020, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(6230..7633)
DNA (1404bp) protein (468aa)
Uncharacterized protein Tax=Streptomyces sp. HGB0020 RepID=S2YCJ3_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EPD62238.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. HGB0020.;"
amino acid permease related protein
PLM3_60_coex_sep16_scaffold_1389_8

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comp(7962..9599)
DNA (1638bp) protein (546aa)
Uncharacterized protein Tax=mine drainage metagenome RepID=T1CC70_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD78953.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
transposase, IS605 OrfB family
PLM3_60_coex_sep16_scaffold_1389_9
Mycobacterium gilvum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(9662..9871)
DNA (210bp) protein (70aa)
hypothetical protein Tax=Mycobacterium sp. 155 RepID=UPI000377EE1D
family 3 adenylate cyclase
Family 3 adenylate cyclase {ECO:0000313|EMBL:ADU01893.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium sp. (strain Spyr1).;"
PLM3_60_coex_sep16_scaffold_1389_10
unknown

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9892..10974
DNA (1083bp) protein (361aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1389_11
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10881..11099)
DNA (219bp) protein (73aa)
Uncharacterized protein Tax=Burkholderia sp. H160 RepID=B5WK77_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EEA01228.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. H160.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_1389_12
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(11317..12483)
DNA (1167bp) protein (389aa)
Uncharacterized protein Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CJ04_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA23224.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM3_60_coex_sep16_scaffold_1389_13
Mycobacterium yongonense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(12486..13157)
DNA (672bp) protein (224aa)
Uncharacterized protein Tax=Mycobacterium intracellulare MOTT-02 RepID=H8IZS2_MYCIT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP61803.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).;" source="Mycobacterium yongonense 05-1390.;"
PLM3_60_coex_sep16_scaffold_1389_14
Mycobacterium mageritense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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13252..14166
DNA (915bp) protein (305aa)
hypothetical protein Tax=Amycolatopsis nigrescens RepID=UPI00037CD26E
Arginase family hydrolase {ECO:0000313|EMBL:CDO24405.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium mageritense.;"
putative Arginase family hydrolase, arginase/agmainase/formiminoglutamate hydrolase
PLM3_60_coex_sep16_scaffold_1389_15
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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14333..14710
DNA (378bp) protein (126aa)
OmpR family two-component response regulator bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
response regulator receiver modulated diguanylate cyclase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1389_16
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(14676..16379)
DNA (1704bp) protein (568aa)
Putative fatty acid-CoA ligase Tax=uncultured Acidobacteria bacterium cosmid p2H8 RepID=B1NMD2_9BACT
AMP-dependent synthetase and ligase
Tax=RBG_16_Deltaproteobacteria_48_10_curated
PLM3_60_coex_sep16_scaffold_1389_17
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(16453..18930)
DNA (2478bp) protein (826aa)
Putative diguanylate cyclase/phosphodiesterase with PAS sensor Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W724_9ACTO
putative diguanylate cyclase/phosphodiesterase with PAS sensor
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1389_18
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

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comp(18935..19513)
DNA (579bp) protein (193aa)
Uncharacterized protein Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B5W7_HERA2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX05760.1}; Flags: Precursor;; species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
Displaying 18 items

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