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PLM3_60_coex_sep16_scaffold_1490

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_1490_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(3..1301)
DNA (1299bp) protein (433aa)
MFS transporter Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4C151
major facilitator superfamily MFS_1
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AHG91563.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM3_60_coex_sep16_scaffold_1490_2
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1500..2426)
DNA (927bp) protein (309aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00035E4007
RIO kinase 1
RIO kinase 1 {ECO:0000313|EMBL:CCH34239.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
PLM3_60_coex_sep16_scaffold_1490_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(2636..3547)
DNA (912bp) protein (304aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_1490_4
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(3562..5034)
DNA (1473bp) protein (491aa)
Band 7 protein Tax=Frankia sp. (strain EAN1pec) RepID=A8KZT6_FRASN
hypothetical protein
Band 7 protein {ECO:0000313|EMBL:ABW10170.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM3_60_coex_sep16_scaffold_1490_5
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5057..5287)
DNA (231bp) protein (77aa)
hypothetical protein Tax=Frankia sp. BCU110501 RepID=UPI00036B43CA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFC82941.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
PLM3_60_coex_sep16_scaffold_1490_6
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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5329..6108
DNA (780bp) protein (260aa)
Trans-aconitate 2-methyltransferase {ECO:0000313|EMBL:ABS24689.1}; EC=2.1.1.144 {ECO:0000313|EMBL:ABS24689.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
Trans-aconitate 2-methyltransferase Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H7J3_ANADF
trans-aconitate 2-methyltransferase
PLM3_60_coex_sep16_scaffold_1490_7
Streptomyces violaceusniger, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(6234..6977)
DNA (744bp) protein (248aa)
ABC-2 type transporter Tax=Streptomyces violaceusniger Tu 4113 RepID=G2NSG1_STRVO
ABC transporter
Transport permease protein {ECO:0000256|RuleBase:RU361157}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces violaceusniger Tu 4113.;"
PLM3_60_coex_sep16_scaffold_1490_8
Streptomyces sp. PRh5, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(6970..7941)
DNA (972bp) protein (324aa)
ABC transporter Tax=Streptomyces rapamycinicus RepID=UPI000382FDD1
ABC transporter {ECO:0000313|EMBL:EXU66068.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. PRh5.;"
ABC transporter
PLM3_60_coex_sep16_scaffold_1490_9
Streptomyces himastatinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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8052..8822
DNA (771bp) protein (257aa)
TetR family transcriptional regulator Tax=Streptomyces himastatinicus ATCC 53653 RepID=D9WU83_9ACTO
TetR family transcriptional regulator {ECO:0000313|EMBL:EFL24317.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces himastatinicus ATCC 53653.;"
tetracycline repressor
PLM3_60_coex_sep16_scaffold_1490_10
Truepera radiovictrix, Truepera, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

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comp(8819..9610)
DNA (792bp) protein (264aa)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|SAAS:SAAS00020852}; EC=3.2.2.- {ECO:0000256|SAAS:SAAS00275239};; EC=3.2.2.23 {ECO:0000256|SAAS:SAAS00020832};; EC=4.2.99.18 {ECO:0000256|SAAS:SAAS00054019};; species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Trueperaceae; Truepera.;" source="Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 /; RQ-24).;"
Formamidopyrimidine-DNA glycosylase Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CY12_TRURR
formamidopyrimidine-DNA glycosylase
PLM3_60_coex_sep16_scaffold_1490_11
Methylomicrobium album, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9615..9947)
DNA (333bp) protein (111aa)
hypothetical protein Tax=Methylovulum miyakonense RepID=UPI0003621EED
NUDIX hydrolase
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:EIC27954.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium album BG8.;"
PLM3_60_coex_sep16_scaffold_1490_12
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(10111..11427)
DNA (1317bp) protein (439aa)
Putative HNH endonuclease Tax=Micromonospora lupini str. Lupac 08 RepID=I0KV33_9ACTO
Putative HNH endonuclease {ECO:0000313|EMBL:CCH15430.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
HNH endonuclease
PLM3_60_coex_sep16_scaffold_1490_13
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(11687..13030)
DNA (1344bp) protein (448aa)
peptidase U62 modulator of DNA gyrase bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
peptidase u62 modulator of DNA gyrase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1490_14
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(13023..14489)
DNA (1467bp) protein (489aa)
TldD/PmbA family protein Tax=Dictyoglomus RepID=B5YBV4_DICT6 bin=16ft_combo_ws3_JS1 species=unknown genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
TldD/PmbA family protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1490_15
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14877..15740
DNA (864bp) protein (288aa)
hypothetical protein Tax=Actinomadura flavalba RepID=UPI00037FF046
phosphotransferase domain-containing protein
PHP C-terminal domain protein {ECO:0000313|EMBL:ABK53568.1}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_60_coex_sep16_scaffold_1490_16
unknown

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15771..16406
DNA (636bp) protein (212aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1490_17
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

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comp(16409..16864)
DNA (456bp) protein (152aa)
Response regulator receiver and ANTAR domain protein Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LTU3_ACIC1
response regulator receiver/ANTAR domain-containing protein
Response regulator receiver and ANTAR domain protein {ECO:0000313|EMBL:ABK52853.1}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_60_coex_sep16_scaffold_1490_18
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16861..18402)
DNA (1542bp) protein (514aa)
PAS/PAC sensor signal transduction histidine kinase Tax=Desulfococcus multivorans DSM 2059 RepID=S7TH93_DESML
PAS domain S-box protein
PAS domain S-box protein {ECO:0000313|EMBL:AHY47781.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
PLM3_60_coex_sep16_scaffold_1490_19
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18560..19360
DNA (801bp) protein (267aa)
RecB family exonuclease Tax=Frankia sp. QA3 RepID=I9A8A3_9ACTO
RecB family exonuclease {ECO:0000313|EMBL:EIV95711.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_1490_20
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19442..19891
DNA (450bp) protein (150aa)
serine/threonine protein kinase Tax=Marinilabilia salmonicolor RepID=UPI00029B3540
Serine-protein kinase RsbW {ECO:0000313|EMBL:GAO31293.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
ATPase ATP-binding protein
PLM3_60_coex_sep16_scaffold_1490_21
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19964..20185)
DNA (222bp) protein (74aa)
DNA-binding protein Tax=Frankia sp. Iso899 RepID=UPI0003B728BC
excisionase family DNA binding domain-containing protein
DNA binding domain-containing protein {ECO:0000313|EMBL:EEP72723.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
PLM3_60_coex_sep16_scaffold_1490_22
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

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comp(20508..21536)
DNA (1029bp) protein (343aa)
ROK family protein Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6YB26_THEBD
ROK family protein
ROK family protein {ECO:0000313|EMBL:ADG88386.1}; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
PLM3_60_coex_sep16_scaffold_1490_23
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21595..23712
DNA (2118bp) protein (706aa)
Possible sodium/hydrogen antiporter Tax=Saccharopolyspora erythraea RepID=A4FJ25_SACEN
nha; sodium/hydrogen antiporter
Possible sodium/hydrogen antiporter {ECO:0000313|EMBL:CAM04050.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea (strain NRRL 23338).;"
Displaying 23 items

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