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PLM3_60_coex_sep16_scaffold_182

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_182_1
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..580)
DNA (579bp) protein (193aa)
hypothetical protein Tax=Actinokineospora enzanensis RepID=UPI00037DCB0B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADD43375.1}; species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
PLM3_60_coex_sep16_scaffold_182_2
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(664..1494)
DNA (831bp) protein (277aa)
hypothetical protein Tax=Catelliglobosispora koreensis RepID=UPI00037EF1DC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU70561.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC; 102108 / JCM 14897).;"
PLM3_60_coex_sep16_scaffold_182_3
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1645..2361)
DNA (717bp) protein (239aa)
Phosphoglycolate phosphatase PGPase; PGP (EC:3.1.3.18)
HAD-superfamily hydrolase Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YE96_9RHIZ
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
PLM3_60_coex_sep16_scaffold_182_4
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2358..2765)
DNA (408bp) protein (136aa)
Ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase Tax=Burkholderia sp. Ch1-1 RepID=I2IRX5_9BURK
Ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase {ECO:0000313|EMBL:EIF33477.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
rieske [2Fe-2S] domain protein
PLM3_60_coex_sep16_scaffold_182_5
Geobacillus sp. Y412MC52, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2755..4227)
DNA (1473bp) protein (491aa)
2-hydroxymuconic semialdehyde dehydrogenase (EC:1.2.1.8)
2-hydroxymuconic semialdehyde dehydrogenase {ECO:0000313|EMBL:ADU93876.1}; EC=1.2.1.8 {ECO:0000313|EMBL:ADU93876.1};; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus sp. (strain Y412MC52).;"
2-hydroxymuconic semialdehyde dehydrogenase Tax=Geobacillus RepID=C9S1R2_GEOSY
PLM3_60_coex_sep16_scaffold_182_6

Not on your lists

comp(4224..4472)
DNA (249bp) protein (83aa)
hypothetical protein Tax=Kocuria sp. UCD-OTCP RepID=UPI000375C534
Marine sediment metagenome DNA, contig: S06H3_C05330 {ECO:0000313|EMBL:GAI13934.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
4-oxalocrotonate tautomerase
PLM3_60_coex_sep16_scaffold_182_7
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4493..5281)
DNA (789bp) protein (263aa)
2-oxopent-4-enoate hydratase (EC:4.2.1.80)
2-oxopent-4-enoate hydratase {ECO:0000313|EMBL:AEA24726.1}; EC=4.2.1.80 {ECO:0000313|EMBL:AEA24726.1};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
2-oxopent-4-enoate hydratase Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CYA4_PSEUX
PLM3_60_coex_sep16_scaffold_182_8
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5278..6366)
DNA (1089bp) protein (363aa)
4-hydroxy-2-oxovalerate aldolase {ECO:0000256|HAMAP-Rule:MF_01656, ECO:0000256|SAAS:SAAS00035546}; Short=HOA {ECO:0000256|HAMAP-Rule:MF_01656};; EC=4.1.3.39 {ECO:0000256|HAMAP-Rule:MF_01656, ECO:0000256|SAAS:SAAS00035546};; 4-hydroxy-2-keto-pentanoic acid aldolase {ECO:0000256|HAMAP-Rule:MF_01656}; 4-hydroxy-2-oxopentanoate aldolase {ECO:0000256|HAMAP-Rule:MF_01656}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
4-hydroxy-2-oxovalerate aldolase Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SI03_THEM7
4-hydroxy-2-oxovalerate aldolase
PLM3_60_coex_sep16_scaffold_182_9
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6363..7271)
DNA (909bp) protein (303aa)
acetaldehyde dehydrogenase (EC:1.2.1.10)
Acetaldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01657, ECO:0000256|SAAS:SAAS00042164}; EC=1.2.1.10 {ECO:0000256|HAMAP-Rule:MF_01657, ECO:0000256|SAAS:SAAS00042125};; Acetaldehyde dehydrogenase [acetylating] {ECO:0000256|HAMAP-Rule:MF_01657}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
Acetaldehyde dehydrogenase Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1AB66_THECD
PLM3_60_coex_sep16_scaffold_182_10
Streptomyces himastatinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7275..8123)
DNA (849bp) protein (283aa)
2-hydroxypenta-2,4-dienoate hydratase Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0002628CA9
Hydratase/decarboxylase {ECO:0000313|EMBL:EFL27667.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces himastatinicus ATCC 53653.;"
2-hydroxypenta-2,4-dienoate hydratase
PLM3_60_coex_sep16_scaffold_182_11
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8120..8929)
DNA (810bp) protein (270aa)
Transcriptional regulator, IclR family Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CY99_PSEUX
IclR family transcriptional regulator
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AEA24721.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM3_60_coex_sep16_scaffold_182_12
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8926..9597)
DNA (672bp) protein (224aa)
hypothetical protein Tax=Actinomycetospora chiangmaiensis RepID=UPI0003786BD5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA24729.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM3_60_coex_sep16_scaffold_182_13
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9770..10681
DNA (912bp) protein (304aa)
catechol 2,3 dioxygenase (EC:1.13.11.2)
Catechol 2,3 dioxygenase {ECO:0000313|EMBL:AEA24730.1}; EC=1.13.11.2 {ECO:0000313|EMBL:AEA24730.1};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
catechol 1,2-dioxygenase Tax=Actinomycetospora chiangmaiensis RepID=UPI00036850DF
PLM3_60_coex_sep16_scaffold_182_14
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10681..11592
DNA (912bp) protein (304aa)
catechol 2,3 dioxygenase (EC:1.13.11.2)
Catechol 2,3 dioxygenase {ECO:0000313|EMBL:AEA24731.1}; EC=1.13.11.2 {ECO:0000313|EMBL:AEA24731.1};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Catechol 2,3 dioxygenase Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CYA9_PSEUX
PLM3_60_coex_sep16_scaffold_182_15
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11605..12699
DNA (1095bp) protein (365aa)
Phosphoglycerate mutase Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CYB0_PSEUX
phosphoglycerate mutase
Phosphoglycerate mutase {ECO:0000313|EMBL:AEA24732.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM3_60_coex_sep16_scaffold_182_16
Crassostrea gigas, Crassostrea, Ostreoida, Pteriomorphia, Mollusca, Metazoa

Not on your lists

12696..13775
DNA (1080bp) protein (360aa)
Putative phosphoenolpyruvate synthase Tax=Crassostrea gigas RepID=K1QX61_CRAGI
Putative phosphoenolpyruvate synthase {ECO:0000313|EMBL:EKC26106.1}; species="Eukaryota; Metazoa; Lophotrochozoa; Mollusca; Bivalvia; Pteriomorphia; Ostreoida; Ostreoidea; Ostreidae; Crassostrea.;" source="Crassostrea gigas (Pacific oyster) (Crassostrea angulata).;"
pyruvate phosphate dikinase PEP/pyruvate-binding protein
PLM3_60_coex_sep16_scaffold_182_17
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

13802..14515
DNA (714bp) protein (238aa)
Uncharacterized protein Tax=Nitritalea halalkaliphila LW7 RepID=I5C0N9_9BACT
PEP-utilizing protein mobile region
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
PLM3_60_coex_sep16_scaffold_182_18
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

14467..15612
DNA (1146bp) protein (382aa)
Phosphoenolpyruvate synthase Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ECC4_BRASB
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
PLM3_60_coex_sep16_scaffold_182_19
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15625..16887
DNA (1263bp) protein (421aa)
phthalate 4,5-dioxygenase (EC:1.14.12.7)
Phthalate 4,5-dioxygenase {ECO:0000313|EMBL:AEA24722.1}; EC=1.14.12.7 {ECO:0000313|EMBL:AEA24722.1};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
hypothetical protein Tax=Actinomycetospora chiangmaiensis RepID=UPI000362082F
PLM3_60_coex_sep16_scaffold_182_20
unknown

Not on your lists

16880..17173
DNA (294bp) protein (98aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_182_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17177..17836
DNA (660bp) protein (220aa)
Phosphoglycolate phosphatase PGPase; PGP (EC:3.1.3.18)
HAD hydrolase, family IA Tax=Shinella zoogloeoides DD12 RepID=V5D7B7_9RHIZ
HAD hydrolase, family IA {ECO:0000313|EMBL:EYR82563.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
PLM3_60_coex_sep16_scaffold_182_22
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18159..19814
DNA (1656bp) protein (552aa)
Uncharacterized protein Tax=Candidatus Microthrix parvicella RN1 RepID=R4YX18_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CCM62819.1}; species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_182_23
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19811..21070
DNA (1260bp) protein (420aa)
Uncharacterized protein Tax=Candidatus Microthrix parvicella RN1 RepID=R4YXE9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CCM62820.1}; species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_182_24
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21070..25404
DNA (4335bp) protein (1445aa)
hypothetical protein Tax=Candidatus Microthrix parvicella RepID=UPI00035C7987
Uncharacterized protein {ECO:0000313|EMBL:CCM62821.1}; species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_182_25
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25413..26684
DNA (1272bp) protein (424aa)
Uncharacterized protein Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z2M4_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CCM62822.1}; species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_182_26
Peptococcaceae bacterium BRH_c4a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27145..27471
DNA (327bp) protein (109aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c4a.;"
SOS-response transcriptional repressor, LexA (EC:3.4.21.88); K01356 repressor LexA [EC:3.4.21.88] bin=bin9_gal15 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
lexA; lexa repressor
PLM3_60_coex_sep16_scaffold_182_27
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27533..28066)
DNA (534bp) protein (178aa)
Uncharacterized protein Tax=Verrucosispora maris (strain AB-18-032) RepID=F4F8C4_VERMA
Uncharacterized protein {ECO:0000313|EMBL:KFA94722.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_182_28
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28063..29214)
DNA (1152bp) protein (384aa)
hypothetical protein Tax=Saccharomonospora halophila RepID=UPI00036F46C2
Uncharacterized protein {ECO:0000313|EMBL:KFA94721.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
hypothetical protein
PLM3_60_coex_sep16_scaffold_182_29
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(29561..30655)
DNA (1095bp) protein (365aa)
Branched-chain amino acid ABC transporter permease Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N4M2_9ARCH bin=RBG9 species=Candidatus Caldiarchaeum subterraneum genus=Candidatus Caldiarchaeum taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=RBG9 organism_group=Chloroflexi
branched-chain amino acid ABC transporter permease
Tax=RBG_16_Actinobacteria_68_12_curated
PLM3_60_coex_sep16_scaffold_182_30
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(30658..31509)
DNA (852bp) protein (284aa)
Branched-chain amino acid ABC transporter permease Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N4M1_9ARCH bin=RBG9 species=Candidatus Caldiarchaeum subterraneum genus=Candidatus Caldiarchaeum taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=RBG9 organism_group=Chloroflexi
branched-chain amino acid ABC transporter permease
Tax=RBG_16_Actinobacteria_68_12_curated
Displaying items 1-30 of 40 in total

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