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PLM3_60_coex_sep16_scaffold_218

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_218_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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2..619
DNA (618bp) protein (206aa)
Integrase catalytic region bin=GWC2_Methylomirabilis_70_16 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
integrase, catalytic region
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_60_coex_sep16_scaffold_218_2
unknown

Not on your lists

comp(893..1132)
DNA (240bp) protein (80aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_218_3
Frankia sp. CcI3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1500..2888
DNA (1389bp) protein (463aa)
hypothetical protein Tax=Salinispora arenicola RepID=UPI0003611207
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:ABD10573.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain CcI3).;"
PLM3_60_coex_sep16_scaffold_218_4
Streptomyces rubellomurinus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2926..3459
DNA (534bp) protein (178aa)
Protein tyrosine phosphatase Tax=Alcanivorax pacificus W11-5 RepID=K2GZH1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KJS52581.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rubellomurinus subsp. indigoferus.;"
protein tyrosine phosphatase
PLM3_60_coex_sep16_scaffold_218_5
Streptomyces cattleya, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4519..5283)
DNA (765bp) protein (255aa)
ATP/GTP binding protein membrane protein Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=F8JY84_STREN
ATP/GTP binding protein membrane protein
ATP/GTP binding protein membrane protein {ECO:0000313|EMBL:AEW94669.1}; Putative ATP/GTP binding protein ( membrane protein) {ECO:0000313|EMBL:CCB75025.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC; 14057 / NRRL 8057).;"
PLM3_60_coex_sep16_scaffold_218_6
Actinoplanes missouriensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5564..7519)
DNA (1956bp) protein (652aa)
Putative diguanylate cyclase/phosphodiesterase Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0H5I1_ACTM4
diguanylate cyclase
Putative diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:BAL88268.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64; / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431).;"
PLM3_60_coex_sep16_scaffold_218_7
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7646..8551)
DNA (906bp) protein (302aa)
Uncharacterized protein Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XR82_MICPN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAK34572.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
PLM3_60_coex_sep16_scaffold_218_8
Streptomyces cattleya, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8553..9698)
DNA (1146bp) protein (382aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC; 14057 / NRRL 8057).;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Tax=Frankia sp. CN3 RepID=G6HNK5_9ACTO
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1
PLM3_60_coex_sep16_scaffold_218_9
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9708..10904)
DNA (1197bp) protein (399aa)
Zinc metalloprotease {ECO:0000313|EMBL:CCH16605.1}; EC=3.4.24.- {ECO:0000313|EMBL:CCH16605.1};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
Zinc metalloprotease Tax=Micromonospora lupini str. Lupac 08 RepID=I0KYF8_9ACTO
peptidase M50
PLM3_60_coex_sep16_scaffold_218_10
Streptomyces aurantiacus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10901..12082)
DNA (1182bp) protein (394aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces aurantiacus JA 4570.;"
hypothetical protein Tax=Sporichthya polymorpha RepID=UPI0003745A7A
PLM3_60_coex_sep16_scaffold_218_11
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(12079..13227)
DNA (1149bp) protein (383aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aggregans (strain MD-66 / DSM 9485).;"
Probable dual-specificity RNA methyltransferase RlmN Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G2T0_CHLAD
ribosomal RNA large subunit methyltransferase N
PLM3_60_coex_sep16_scaffold_218_12
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13224..14105)
DNA (882bp) protein (294aa)
phosphatidate cytidylyltransferase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
Phosphatidate cytidylyltransferase Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5BWT7_BEUC1
PLM3_60_coex_sep16_scaffold_218_13
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14111..14668)
DNA (558bp) protein (186aa)
Ribosome-recycling factor Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=RRF_ACIC1
ribosome recycling factor
Ribosome-recycling factor {ECO:0000255|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000255|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000255|HAMAP-Rule:MF_00040}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_60_coex_sep16_scaffold_218_14
Streptomyces sp. Mg1, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14665..15453)
DNA (789bp) protein (263aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. Mg1.;"
hypothetical protein Tax=Streptomyces scabrisporus RepID=UPI000375BEF2
pyrH; uridylate kinase
PLM3_60_coex_sep16_scaffold_218_15
Coprothermobacter proteolyticus, Coprothermobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15495..16103)
DNA (609bp) protein (203aa)
Elongation factor Ts Tax=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) RepID=EFTS_COPPD
tsf; translation elongation factor Ts
Elongation factor Ts {ECO:0000255|HAMAP-Rule:MF_00050}; Short=EF-Ts {ECO:0000255|HAMAP-Rule:MF_00050};; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermodesulfobiaceae; Coprothermobacter.;" source="Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT).;"
PLM3_60_coex_sep16_scaffold_218_16
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(16145..17182)
DNA (1038bp) protein (346aa)
30S ribosomal protein S2 Tax=Frankia sp. BMG5.12 RepID=UPI00035D34EE
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
30S ribosomal protein S2
PLM3_60_coex_sep16_scaffold_218_17
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17374..17919)
DNA (546bp) protein (182aa)
Peptidase M23 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H6L5_CELFA
peptidase M23
Peptidase M23 {ECO:0000313|EMBL:AEE45648.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
PLM3_60_coex_sep16_scaffold_218_18
Arthrobacter crystallopoietes, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18112..19326
DNA (1215bp) protein (405aa)
FAD dependent oxidoreductase Tax=Arthrobacter crystallopoietes BAB-32 RepID=N1UYN2_9MICC
FAD dependent oxidoreductase {ECO:0000313|EMBL:EMY34165.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter crystallopoietes BAB-32.;"
FAD dependent oxidoreductase
PLM3_60_coex_sep16_scaffold_218_19
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19339..20106)
DNA (768bp) protein (256aa)
RNA polymerase sigma factor Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LV58_ACIC1
RNA polymerase sigma factor WhiG
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM3_60_coex_sep16_scaffold_218_20
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(20212..21216)
DNA (1005bp) protein (335aa)
tyrosine recombinase XerD subunit; K04763 integrase/recombinase XerD bin=RBG_19FT_COMBO_GAL15_69_19 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
xerC; site-specific recombinase XerC
Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
PLM3_60_coex_sep16_scaffold_218_21
Rhodobacter capsulatus, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21209..22288)
DNA (1080bp) protein (360aa)
DNA processing protein DprA Tax=Rhodobacter capsulatus YW2 RepID=V8HLD1_RHOCA
drpA; DNA protecting protein DprA
DNA protecting protein DprA {ECO:0000313|EMBL:ADE86822.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003).;"
PLM3_60_coex_sep16_scaffold_218_22
Eikenella corrodens, Eikenella, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22453..22959)
DNA (507bp) protein (169aa)
Magnesium chelatase, subunit ChlI Tax=Eikenella corrodens ATCC 23834 RepID=C0DSN5_EIKCO
Magnesium chelatase, subunit ChlI {ECO:0000313|EMBL:EEG24948.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Eikenella.;" source="Eikenella corrodens ATCC 23834.;"
Mg chelatase, subunit ChlI
PLM3_60_coex_sep16_scaffold_218_23
Streptomyces scabiei, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23022..23414)
DNA (393bp) protein (131aa)
Uncharacterized protein Tax=Streptomyces scabies (strain 87.22) RepID=C9Z8A8_STRSW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBG68536.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces scabies (strain 87.22) (Streptomyces scabiei).;"
PLM3_60_coex_sep16_scaffold_218_24
Streptomyces sp. e14, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23411..24466)
DNA (1056bp) protein (352aa)
Uncharacterized protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AXP0_STRRD
phage integrase family domain-containing protein
Phage integrase family domain-containing protein {ECO:0000313|EMBL:EFF93341.2}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. e14.;"
PLM3_60_coex_sep16_scaffold_218_25
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24559..25476)
DNA (918bp) protein (306aa)
Uncharacterized protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AXP0_STRRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ83220.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM3_60_coex_sep16_scaffold_218_26
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25596..27332)
DNA (1737bp) protein (579aa)
Uncharacterized protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AXN9_STRRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ83219.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM3_60_coex_sep16_scaffold_218_27
Streptomyces rubellomurinus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27470..28540)
DNA (1071bp) protein (357aa)
Putative phage type integrase/recombinase Tax=Rhodococcus fascians D188 RepID=G8JZ06_RHOFA
Integrase {ECO:0000313|EMBL:KJS53503.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rubellomurinus subsp. indigoferus.;"
integrase domain-containing protein
PLM3_60_coex_sep16_scaffold_218_28
Mycobacterium sp. KMS, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29243..29983)
DNA (741bp) protein (247aa)
Alpha/beta hydrolase fold protein Tax=Mycobacterium tusciae JS617 RepID=H1JYZ1_9MYCO
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ABL91879.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium sp. (strain KMS).;"
PLM3_60_coex_sep16_scaffold_218_29
Nocardia vulneris, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29988..30662)
DNA (675bp) protein (225aa)
Uncharacterized protein Tax=Rhodococcus opacus (strain B4) RepID=C1B4U7_RHOOB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIA64249.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia vulneris.;"
PLM3_60_coex_sep16_scaffold_218_trna_1
unknown

Not on your lists

comp(30621..30693)
DNA (73bp)
transferRNA Thr
Displaying items 1-30 of 54 in total

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